PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453493
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 137aa    MW: 16192 Da    PI: 5.128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453493genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-15243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++ E+ l+ +++ ++G++ W++I+r+++ gRt++++k++w++++
        678453493  2 SPREEHLIMELHSKWGNR-WSRISRRLP-GRTDNEIKNYWRTHM 43
                     789***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3E-8145IPR001005SANT/Myb domain
PROSITE profilePS5129422.734147IPR017930Myb domain
CDDcd001672.74E-8143No hitNo description
PfamPF002496.5E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-19244IPR009057Homeodomain-like
SuperFamilySSF466893.2E-12247IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MSPREEHLIM ELHSKWGNRW SRISRRLPGR TDNEIKNYWR THMRKEARAK KQKAATSTEE  60
SKGISTAAGE SEAGKTVEEW TEPCTMDDIW KDIEESSNEF TSKGEASSYW WDMDSIWEME  120
EEQKQMEWHA SLPRLVP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453493
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089426.17e-31transcription factor MYB48 isoform X2
RefseqXP_020552655.17e-31transcription factor MYB59 isoform X1
SwissprotQ53NK61e-25MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A2G9I2H33e-31A0A2G9I2H3_9LAMI; Uncharacterized protein
TrEMBLA0A2G9I4153e-31A0A2G9I415_9LAMI; Uncharacterized protein
TrEMBLA0A2G9I9623e-31A0A2G9I962_9LAMI; Uncharacterized protein
STRINGAES888126e-29(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.16e-24myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]