PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678453621

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 215aa MW: 24857.8 Da PI: 7.0327

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678453621	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.3e-21	54	107	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +t+f++eql+ Le+ F+++ p+ ++ +LAkklgL+ rqV +WFqNrRa+ k 678453621 54 MKTRFSEEQLRSLETTFAEEERPDPGTKLQLAKKLGLEPRQVAIWFQNRRARTK 107 579*************************************************98 PP
2	HD-ZIP_I/II	101.7	6.2e-33	55	144	3	92
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k r+s+eq+++LE++F eee+ +p K +la++Lgl+prqva+WFqnrRARtk kq+E++ aL+++yd+++ + e+L+ke++ L +++ 678453621 55 KTRFSEEQLRSLETTFAEEERPDPGTKLQLAKKLGLEPRQVAIWFQNRRARTKCKQMERELGALQANYDEMALRFEELKKENQLLLLQVQ 144 89*********************************************************************************9987776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.13E-19	38	110	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.799	49	109	IPR001356	Homeobox domain
SMART	SM00389	5.8E-17	51	113	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-18	54	107	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.0E-21	55	113	IPR009057	Homeodomain-like
CDD	cd00086	6.02E-16	55	107	No hit	No description
PRINTS	PR00031	8.9E-6	80	89	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	84	107	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.9E-6	89	105	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.0E-10	109	149	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MYNDSSRTHV QRPVPYPFST VTGYGLDPSR VDPLDTRVNP LSVDRRCHRP PSSMKTRFSE 60 EQLRSLETTF AEEERPDPGT KLQLAKKLGL EPRQVAIWFQ NRRARTKCKQ MERELGALQA 120 NYDEMALRFE ELKKENQLLL LQVQRFKKMA GMTDGGDDSN SHKTAANWEH PEFLRQLSSE 180 MVDAKYDVNR GGYLDDGSFD DGCSFQSHSS RCWDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	109	RRARTKCKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678453621

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012842101.1	2e-37	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Swissprot	Q651Z5	4e-28	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	4e-28	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A2G9GG26	5e-43	A0A2G9GG26_9LAMI; Uncharacterized protein
STRING	Migut.E00626.1.p	9e-37	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10273	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	4e-25	homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]