PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453979
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 377aa    MW: 42174.6 Da    PI: 6.5178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453979genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-15283329455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L++l+P++      K +Ka++L  A++Y+ksLq
  678453979 283 VHNLSERRRRDRINEKMRALQKLIPHS-----HKSDKASMLDDAIKYMKSLQ 329
                5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.27E-18277342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.066279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-18280347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-15282333No hitNo description
PfamPF000109.6E-13283329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-17285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDRKPNMIPL KSKLSIAIVR CLLPCFYPDE KKLMFEVNLT AVKEDGRETG MSAMDGYGHT  60
ELNVECPLLP FQRQSFGLEN ELMEILWQDG EAFLQSQSHR KPNEHVPWVD DNSFDYLELM  120
SGIPPSHLPE PNKLADVEED FRLAIFNPIQ LPLPAAAVSD REQGFVTDSS VMTMDLSNGS  180
SCPVGNEVNK SSRGKGSNAV LAEVGDNSCR KVSSQINDIG KEMTEPENAS FRGSASEDNK  240
SSKRKIRDVD ESASPSEDCQ MESSGGKNRS PQKSIRRSRV AEVHNLSERR RRDRINEKMR  300
ALQKLIPHSH KSDKASMLDD AIKYMKSLQS QLQVVTSHKF MVKNMKFLSS VDADAASGGW  360
ETEWRKRGCC SNSTILG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453979
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100371.14e-46transcription factor PIF4
RefseqXP_011100372.14e-46transcription factor PIF4
TrEMBLA0A2G9G9564e-45A0A2G9G956_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-27phytochrome interacting factor 3-like 5