PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678454369
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26083.8 Da    PI: 7.8422
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678454369genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.2e-1973126255
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                rk+ ++t+eq++ Le+ F+k+ +++++e++ LA+kl+L+ rqV vWFqNrRa++
  678454369  73 RKKLRLTREQTTLLEDSFRKQTTLNTAEKQALAEKLKLKPRQVEVWFQNRRARY 126
                678899**********************************************96 PP
2HD-ZIP_I/II76.93.5e-2573128156
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtkt 56 
                  +kk+rl++eq +lLE+sF+++++L++ +K++la++L+l+prqv+vWFqnrRAR+  
    678454369  73 RKKLRLTREQTTLLEDSFRKQTTLNTAEKQALAEKLKLKPRQVEVWFQNRRARYEE 128
                  69***************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-1760126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1665125IPR009057Homeodomain-like
PROSITE profilePS5007116.97369129IPR001356Homeobox domain
SMARTSM003894.4E-1471133IPR001356Homeobox domain
PfamPF000463.5E-1673126IPR001356Homeobox domain
CDDcd000863.25E-1473126No hitNo description
PfamPF021832.3E-8153185IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.7E-9153196IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAMGEDELQL ELGLGLGFAK TEARRPKKRV FLVDIPTPNS SHRLLQDCKD SGLLMEEEDD  60
DYCDRNFSSE FGRKKLRLTR EQTTLLEDSF RKQTTLNTAE KQALAEKLKL KPRQVEVWFQ  120
NRRARYEESG LHGHAFMLGF SCVPLLHCRN KLKQTEVDYE FLKRSHERLL DENRRLNEEL  180
AKLRSHDIKK LDPLPGFLND RKAAPEETCE RRGCAAVGLE PPTLT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678454369
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837577.17e-39PREDICTED: homeobox-leucine zipper protein HOX17-like
SwissprotA2XE763e-27HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL43e-27HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLS8DMC72e-38S8DMC7_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.J01509.1.p4e-33(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-09homeobox from Arabidopsis thaliana