PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678454619

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 992aa MW: 109786 Da PI: 6.7923

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678454619	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.5e-41	160	237	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adls+ak+yhrrhkvC+vhska+++lv ++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ 678454619 160 VCQVEGCRADLSSAKDYHRRHKVCDVHSKASTALVGSIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKAHP 237 6**************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-31	154	222	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.385	158	235	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.1E-37	159	238	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-29	161	234	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.73E-10	726	877	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.4E-9	728	879	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.68E-8	770	869	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MTCGNTGFSQ MEAKFGRNLH RLCEPVVSDL NGVGKRSIEW DLNEWRWDGD FLRASPLNPV 60 PSDCSSRHPF GPDIPVKNAS LNFLASSSVE AILEDGREKR DSEKRRRYID VNEEHENGEA 120 GSLDLMLGDQ VFPIVDKDAD KSEKSGKKSN LCGEQSSRAV CQVEGCRADL SSAKDYHRRH 180 KVCDVHSKAS TALVGSIMQR FCQQCSRFHV LEEFDEGKRS CRRRLAGHNK RRRKAHPENA 240 VGSTAVNDEQ RTKYLLISLL RILSNIQSSS SDQTKDQDLL AHLLRNLATV SGSTNISNPN 300 GLLPVSPDLQ NAGTSCGKTI RENGSSDERP LPLPQTGLVS KDTLTDSAQV GAARVSTALC 360 NAMPSAKSIG CEGRVKMSNI DLNNVYDDSE DCTEDLVDNI PLENVSPYVS PWSFKDSQRS 420 SPPQSQSPST SSGEAQSRTD RIVFKLFGKD PSDFPLELRK QMIDWLSSSP SDIESYIRPG 480 CIILTIYACM DKSSWDELNC NLHSSLKRLL DASSNPFWTT DWIYTRVQHR ASFVYNGSIK 540 LYTLYTPLHV ALLMIALESC RISMISPIAV SFSETVHFSV KGYNLSGSTS RLLCALEGRY 600 ILQQSCADVV GADSYADNGG IQCLQFSCAV PHVVGRGFIE VEDYCLNSSF FPFIVAEKDV 660 CAAICDLEKI IDVDSENLDP DKTEARNQAL NFVHEMGWLL HKNSLILRVG AMRDDVDLFS 720 FRRFKYLIEF AIDHGWPAVV RKLLNVVFDG TVDMGKGTSA VAALLDLGLL HRAARTNSIP 780 VVKLLLEYRS TRRIADAHKQ TDCSSFLFMP DSTGPCGLTP LHIAAGLDDA HDLIDALTED 840 PQSVGIGAWN SVRDHSGLTP HDYACLRGHY SYTHLVQKKQ LSKKHGGHVV IDVPGTQLDV 900 AITKQKMAGV SSKMAVFRTE KTMGEMMSCS KCEQMMSYGS PKPSVALYRP AMLSMVLIAA 960 VCVCAALLFK SSPEVVYLFR PFRWELLKYG AE

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MTCGNTGFSQ MEAKFGRNLH RLCEPVVSDL NGVGKRSIEW DLNEWRWDGD FLRASPLNPV  60
PSDCSSRHPF GPDIPVKNAS LNFLASSSVE AILEDGREKR DSEKRRRYID VNEEHENGEA  120
GSLDLMLGDQ VFPIVDKDAD KSEKSGKKSN LCGEQSSRAV CQVEGCRADL SSAKDYHRRH  180
KVCDVHSKAS TALVGSIMQR FCQQCSRFHV LEEFDEGKRS CRRRLAGHNK RRRKAHPENA  240
VGSTAVNDEQ RTKYLLISLL RILSNIQSSS SDQTKDQDLL AHLLRNLATV SGSTNISNPN  300
GLLPVSPDLQ NAGTSCGKTI RENGSSDERP LPLPQTGLVS KDTLTDSAQV GAARVSTALC  360
NAMPSAKSIG CEGRVKMSNI DLNNVYDDSE DCTEDLVDNI PLENVSPYVS PWSFKDSQRS  420
SPPQSQSPST SSGEAQSRTD RIVFKLFGKD PSDFPLELRK QMIDWLSSSP SDIESYIRPG  480
CIILTIYACM DKSSWDELNC NLHSSLKRLL DASSNPFWTT DWIYTRVQHR ASFVYNGSIK  540
LYTLYTPLHV ALLMIALESC RISMISPIAV SFSETVHFSV KGYNLSGSTS RLLCALEGRY  600
ILQQSCADVV GADSYADNGG IQCLQFSCAV PHVVGRGFIE VEDYCLNSSF FPFIVAEKDV  660
CAAICDLEKI IDVDSENLDP DKTEARNQAL NFVHEMGWLL HKNSLILRVG AMRDDVDLFS  720
FRRFKYLIEF AIDHGWPAVV RKLLNVVFDG TVDMGKGTSA VAALLDLGLL HRAARTNSIP  780
VVKLLLEYRS TRRIADAHKQ TDCSSFLFMP DSTGPCGLTP LHIAAGLDDA HDLIDALTED  840
PQSVGIGAWN SVRDHSGLTP HDYACLRGHY SYTHLVQKKQ LSKKHGGHVV IDVPGTQLDV  900
AITKQKMAGV SSKMAVFRTE KTMGEMMSCS KCEQMMSYGS PKPSVALYRP AMLSMVLIAA  960
VCVCAALLFK SSPEVVYLFR PFRWELLKYG AE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	160	234	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	107	EKRRRY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678454619

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547976.1	0.0	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
TrEMBL	A0A2G9I0L1	0.0	A0A2G9I0L1_9LAMI; Uncharacterized protein
STRING	VIT_05s0020g00700.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12