PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678454987
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 559aa    MW: 61749.6 Da    PI: 5.3538
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678454987genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.51.2e-1271995541374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav+++dl+la+al++++  l  +++ +m+R+a +f eAL++r+++         +p++ ++   + + + ++ f++++P+lkf+h+taNq
  678454987 199 LVHTLMACAEAVQQEDLKLAEALVNTIGVLGVSQAGAMRRVALCFQEALNRRIHK---------APTNLRD--YAINHKLQNHFYDACPYLKFAHFTANQ 287
                689****************************************************.........4555543..3344456677***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aIlea++g+++vH+iDf+i+qG+QWp+Ll+aLa+ p+g+p++R+Tgvg+pe  ++++l+e+g +L++fA+e++v f+++ +v+++l+dl+ ++L++k+gE
  678454987 288 AILEAFAGKKHVHVIDFSINQGMQWPPLLHALANVPDGAPTFRLTGVGPPE--QSDSLQEVGLNLSRFAKEFRVAFDYRKIVVNSLADLDASMLHIKEGE 385
                *************************************************88..*********************************************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                ++aVn+++ lh++l++++++++    vL+lv + +P++++vveqea+h++e F +rf++al+yysa+fdsle+  +  see++ +++ +lg++i+nvvac
  678454987 386 TVAVNSIFDLHQMLARPGAIDK----VLQLVVESKPQIFTVVEQEASHSGEFFYDRFTSALHYYSAFFDSLESC-SGGSEENKAMSELYLGQQICNVVAC 480
                **************99999988....*********************************************998.7999********************* PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                eg++r+erhe+l++Wr+r+++aGF+pv+l++++ kqa l+l+  +++gy+v+e+sg+l+lgW+++pL+++SaWr
  678454987 481 EGEDRVERHESLAQWRNRFGSAGFEPVHLGSNVHKQAMLILASSGGNGYTVDERSGCLMLGWQNQPLIAASAWR 554
                *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.4E-213293IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.0E-1932105No hitNo description
PROSITE profilePS5098560.185173534IPR005202Transcription factor GRAS
PfamPF035144.2E-125199554IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MKREHLSDEN SSNSWGNCSS DKVRWASAEK EDELFSLLGY TVKPSEMARV AEKIQQIEMA  60
MWSTPEDGFS ELAADTVHHN PSDIFSWLES MRSGIFSLPE LDSSAAPFLE SPAAENSSSR  120
ANISDRMAVN LDFGSDLIAI PGKAIYPVDE SVEKAHQPPA KKAKISPRLS SSSYVEDLGR  180
GSDLPRPLLV DSEENGIRLV HTLMACAEAV QQEDLKLAEA LVNTIGVLGV SQAGAMRRVA  240
LCFQEALNRR IHKAPTNLRD YAINHKLQNH FYDACPYLKF AHFTANQAIL EAFAGKKHVH  300
VIDFSINQGM QWPPLLHALA NVPDGAPTFR LTGVGPPEQS DSLQEVGLNL SRFAKEFRVA  360
FDYRKIVVNS LADLDASMLH IKEGETVAVN SIFDLHQMLA RPGAIDKVLQ LVVESKPQIF  420
TVVEQEASHS GEFFYDRFTS ALHYYSAFFD SLESCSGGSE ENKAMSELYL GQQICNVVAC  480
EGEDRVERHE SLAQWRNRFG SAGFEPVHLG SNVHKQAMLI LASSGGNGYT VDERSGCLML  540
GWQNQPLIAA SAWRIPPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6119355313378Protein SCARECROW
5b3h_A3e-6119355312377Protein SCARECROW
5b3h_D3e-6119355312377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678454987
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070609.10.0DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2G9HQV20.0A0A2G9HQV2_9LAMI; Uncharacterized protein
STRINGMigut.E00445.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein