PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455232
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 197aa    MW: 21679.1 Da    PI: 10.3618
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455232genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260781.6e-242138199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.................................edamsslv 62 
                +C++C+vlrr+C ++C+l+p++     p++q++++ +v k+FG+s ++++++a+pe++r                                 +++++sl+
  678455232   2 SCNGCRVLRRGCGEKCILRPCLewiqsPESQAHATLFVSKFFGRSDLMSFISAVPENRRpgrsigsnpnkikslfavfffvlilvfvgrfysTALFQSLL 101
                6*********************************************************9***************************************** PP

     DUF260  63 yeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +eA+ r+ +Pv Gavg++++++++l+q++++++l+++
  678455232 102 FEACGRTVNPVDGAVGLLTSGNWHLCQAAVDAVLAGS 138
                ******************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.7051140IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-13261IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-693134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSCNGCRVLR RGCGEKCILR PCLEWIQSPE SQAHATLFVS KFFGRSDLMS FISAVPENRR  60
PGRSIGSNPN KIKSLFAVFF FVLILVFVGR FYSTALFQSL LFEACGRTVN PVDGAVGLLT  120
SGNWHLCQAA VDAVLAGSSI HPTSVDFQRP AVATPFAHPR MRTQNTTSSV SVLSEVSAEL  180
GRRRDVGREP KLLNLFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455232
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074366.21e-59LOW QUALITY PROTEIN: LOB domain-containing protein 38-like
SwissprotQ9SZE82e-51LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A2G9HX531e-57A0A2G9HX53_9LAMI; Uncharacterized protein
STRINGVIT_18s0001g09250.t012e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-53LOB domain-containing protein 39