PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678455325

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NF-YB

Protein Properties

Length: 335aa MW: 35683.3 Da PI: 6.7318

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678455325	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	183.2	2.2e-57	19	114	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrkt+ngddllwa++tlGfe+yveplkvyl kyre+egek 678455325 19 KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTVNGDDLLWAMTTLGFEEYVEPLKVYLGKYREMEGEK 114 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.0E-53	12	118	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-39	21	120	IPR009072	Histone-fold
Pfam	PF00808	2.3E-27	24	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.8E-20	52	70	No hit	No description
PROSITE pattern	PS00685	0	55	71	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.8E-20	71	89	No hit	No description
PRINTS	PR00615	2.8E-20	90	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MADSENDSGG YNNSNSSNKE QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI 60 SFVTGEASDK CQREKRKTVN GDDLLWAMTT LGFEEYVEPL KVYLGKYREM EGEKISSGGS 120 EDGGAAVNSV GGVVIGGGIY GASAMDYHHA GNVYGGAEAA DAFQRVHGAG TGRGFVAKRT 180 SPCSCSNSKF ATSDEASIHS ISRLATATER PKFAVSPGGV VVAGAELNHG DVAGFLPVEL 240 GLLPGIALLH LISAATDSRG LSHLLHYSPF LPLIIFTRRI SSLSYLLKVC GPLLLPQFSR 300 VGHETCSCVG LFSLLHISFG PTEQHNNNQI PDFRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-46	19	109	2	92	Transcription factor HapC (Eurofung)
4g92_B	2e-46	19	109	2	92	Transcription factor HapC (Eurofung)

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678455325

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100345.1	3e-81	nuclear transcription factor Y subunit B-3
TrEMBL	A0A2G9HCD2	2e-78	A0A2G9HCD2_9LAMI; CCAAT-binding factor, subunit A (HAP3)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	5e-64	nuclear factor Y, subunit B3