PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678455562

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

MYB_related

Protein Properties

Length: 94aa MW: 10510.7 Da PI: 6.2431

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678455562	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.6	5.1e-12	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg WT+eEd +l +++q+G+++W++I++ g 678455562 14 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKQAG 45 89**************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.8E-14	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.24E-9	8	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.21	9	62	IPR017930	Myb domain
Pfam	PF00249	4.4E-10	14	45	IPR001005	SANT/Myb domain
CDD	cd00167	1.77E-5	17	45	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MGRIPCCEKD NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKQAGESAAV WEELQAAVDE 60 LSPAGPETRS VFRGGGADNR HSAFSSWEQV AYLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678455562

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A287IMV0	2e-26	A0A287IMV0_HORVV; Uncharacterized protein
STRING	OS04T0470600-00	1e-28	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	3e-26	myb domain protein 103