PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455683
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 261aa    MW: 28954.7 Da    PI: 8.47
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455683genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19121171255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr ++ +g+++AeIrdp   + k  r++lg+++ta eAa+a+++a+ +l+g
  678455683 121 HYRGVRKRP-WGKFAAEIRDP---NkKGSRVWLGTYDTAVEAARAYDRAAFRLRG 171
                7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32120180IPR001471AP2/ERF domain
CDDcd000181.73E-31121179No hitNo description
SMARTSM003803.1E-39121185IPR001471AP2/ERF domain
PROSITE profilePS5103224.566121179IPR001471AP2/ERF domain
PfamPF008477.1E-14121171IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23121181IPR016177DNA-binding domain
PRINTSPR003671.6E-13122133IPR001471AP2/ERF domain
PRINTSPR003671.6E-13161181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGAFFDETSQ LEMIRQHLLL DDISFIDNYG DKSCCFLLES QLSADSNSLV SDLTMISSPA  60
SVDTPASGSS SSSSSSRLMD FSFESGLLEF ETKPIRKKPC LTVAVPANKA KVVTDSNDRR  120
HYRGVRKRPW GKFAAEIRDP NKKGSRVWLG TYDTAVEAAR AYDRAAFRLR GSKAILNFPL  180
EIGNSNRNEP FTATVAVVET SRKRMRDSEV AARPVKIETD ETEVPLTPSS WMAVWDSFNG  240
NGIFEIPPLS PPSSPRKVPR H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-30120182466ATERF1
3gcc_A4e-30120182466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455683
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022872923.15e-64ethylene-responsive transcription factor 5-like
TrEMBLX2BY495e-64X2BY49_PANQU; Transcription factor ERF1
STRINGMigut.F00527.1.p3e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-40ERF family protein