PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455862
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 561aa    MW: 65167.5 Da    PI: 7.5761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455862genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07231250625
                -SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                C+f+++tG C++G rC+++H
  678455862 231 CPFHLKTGACRFGTRCSRIH 250
                *******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.324225253IPR000571Zinc finger, CCCH-type
SMARTSM003561.1226252IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5230250IPR000571Zinc finger, CCCH-type
PRINTSPR018481.5E-12231250IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.5E-12250270IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3303.7E-10278318IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549283.8E-8279318IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003564.6309332IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.671312333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MPQSSPMAET EAGENAQVTS TAKIGTGASR VTPPTRRDRR MAAKKGKRKK KRQEMGEVAR  60
REEENRMNDP EEQLRLQAEE EMEKRSLEKA RMEFEERERR IMEEWERSRA EQERIRAEEE  120
EESIRKRSQN EYEEKAVDED DWEYVEEGPP EILWQGNEII VKKKKIKVKR EDAQRLRIEE  180
DPNRPTSNPF PPDSEAFDDS VSGSVLSAQD LLDNVAQETP NFGTEQDKAH CPFHLKTGAC  240
RFGTRCSRIH FYPNKSCTLL IKNMYSGPGL AWEQDEGLEV CRNGLSHLRG NVYVHYKSQD  300
SATAAFQFMN GRYFAGKQTC SRGISCNFIH PFRNPGGDYE WADWDKPAPR HWQREMAVLF  360
GTSDEQESPR YGSHRSHSPE SVSDTRRRRS TSLHREQKHS DDHFRRQSDG KSRWRDEPHH  420
ARSPPTDKDT NGRSRKHAKG KHAGSPENGK HLHTRSRGSN SEHGTVNGWD RENDKGLQTV  480
DGNPENQVSN HTNDRRSRRS HDMRFSGELK RKPDADHPYD DDKRRRQRAH SKDGSKKPDL  540
SHEETDVYNM EGMIDRWEPT L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A3e-172223309167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13552RRDRRMAAKKGKRKKKRQ
24351KKGKRKKKR
3509525KRKPDADHPYDDDKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455862
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840247.11e-131PREDICTED: zinc finger CCCH domain-containing protein 5
SwissprotQ9SY741e-114C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A4D9C1V51e-130A0A4D9C1V5_SALSN; Splicing factor U2AF 35 kDa subunit
TrEMBLS8C2841e-135S8C284_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.B00725.1.p1e-131(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA818966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.15e-95C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]