PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678456037

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

M-type_MADS

Protein Properties

Length: 252aa MW: 28273.1 Da PI: 5.4399

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678456037	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.3	6.4e-31	34	83	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fs++g+lyey+ 678456037 34 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRLYEYA 83 79***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-39	26	85	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.983	26	86	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-32	27	99	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.94E-47	27	103	No hit	No description
PROSITE pattern	PS00350	0	28	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-32	28	48	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-26	35	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-32	48	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-32	63	84	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MAKEAPTASM EFPNQESENS NSSRKNGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL 60 SVLCDAEIAL IVFSTRGRLY EYANNSVRAT IERYKKATAD SSISVSASEA NVQNELLYAE 120 IELMQKRVHF STEVCLKSAQ IISILSCEFV VQEAELHNAN MFLRAKVTAG ACETQTCVNT 180 EPECGIGMLT LQIAENERAQ QQINLLPVQV PAVGSEYQGM NSQPYDLRNF LPVNLMEPNN 240 DYSLHDQLPL QL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	4e-20	27	94	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	4e-20	27	94	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	4e-20	27	94	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	4e-20	27	94	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3kov_B	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3kov_I	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3kov_J	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3p57_A	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3p57_B	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3p57_C	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3p57_D	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3p57_I	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3p57_J	6e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
6c9l_A	7e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_B	7e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_C	7e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_D	7e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_E	7e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_F	7e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678456037

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082936.1	3e-86	floral homeotic protein AGAMOUS
Swissprot	Q93XH4	3e-70	MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBL	A0A2G9HUZ9	6e-82	A0A2G9HUZ9_9LAMI; MADS box transcription factor
STRING	XP_009762632.1	2e-73	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	2e-60	MIKC_MADS family protein

Publications ? help Back to Top
Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]