PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456198
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HB-PHD
Protein Properties Length: 677aa    MW: 76937.5 Da    PI: 9.862
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456198genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-09474521653
                S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                ++ +e +eeL  +F++n  p ++ r +LA++lg++ ++V  WF+N R+
  678456198 474 RLPPEAVEELRVVFNENELPERALRVDLARRLGVELDKVNKWFKNARY 521
                5668999***************************************97 PP
2PHD34.83.9e-12211265150
                SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
        PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                +C+ C++   + e+ ++ Cd +C ++fH  C++++  se++p++   w+C+ C++
  678456198 211 VCAKCKSqePTLENAIIRCDgTCFRAFHRRCIDPPVPSEDIPSDgeGWFCKFCEK 265
                5999*9955555********56********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.17E-13204269IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.6E-12209267IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.353209266IPR019787Zinc finger, PHD-finger
CDDcd155047.55E-20211263No hitNo description
SMARTSM002492.5E-7211264IPR001965Zinc finger, PHD-type
PROSITE patternPS013590212263IPR019786Zinc finger, PHD-type, conserved site
PfamPF006282.4E-9212265IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:1.10.10.601.6E-11460520IPR009057Homeodomain-like
SuperFamilySSF466894.28E-10462522IPR009057Homeodomain-like
PROSITE profilePS5007112.131466526IPR001356Homeobox domain
SMARTSM003896.2E-8467530IPR001356Homeobox domain
CDDcd000861.59E-7469521No hitNo description
PfamPF000462.9E-7474521IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MPGANKKDGF CIEDDNITLR SLKLKLKTRK KGGLAASKRA ISNRSYKGTG NARLKKKILN  60
KAIAIKKKTC KKEPSVSSTK VKNKRSEKEG EKVGDQDVNP RKLKWRRRKK NRRNNLELDE  120
ASRLQRRTRY LLIKLKLEQN LIDAYAAEGW KGQSREKIKP EKELLRAQEQ ILKCKLGIRE  180
AIHQLDLLGS EGCNDVLTTA LDGAVPLKNI VCAKCKSQEP TLENAIIRCD GTCFRAFHRR  240
CIDPPVPSED IPSDGEGWFC KFCEKKKEIL EATNAHLGTQ FPLDSNWEDV FRDEAALPEV  300
GSSMVFQEEE WPSDDSEDDD YDPNRVENSC RSDGQTASKS DTTGCSSSWL GSVEDESVFT  360
SGGIEVESVR CSNGMHIDND NFNNDEVSGP RQRAAVDYIK LYDEMFGKNA ENEQHSEDED  420
WGPGKRKRKV RETDAASTLM ALGETDIKEL EGMASMPIHK DSLEQVKAKK RNLRLPPEAV  480
EELRVVFNEN ELPERALRVD LARRLGVELD KVNKWFKNAR YLALKARKEP ERKTCKENHV  540
IGSRDLGALQ NCKKAKRETH SHTKGNHRRK SLRHNAENSQ KANLDPGDDV SLKFLREKAR  600
EARRKSNNKR KSSMLKAGAD MEKLCRMKSR VEKMQQLLLQ LPVRRFSKSS TVSSSKTSIM  660
FVPVAEVREK REAAEFP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456198
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553239.10.0pathogenesis-related homeodomain protein isoform X2
TrEMBLA0A2Z7CRL00.0A0A2Z7CRL0_9LAMI; Pathogenesis-related homeodomain protein
STRINGMigut.J00799.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-119pathogenesis related homeodomain protein A