PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456216
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 157aa    MW: 18350 Da    PI: 5.7459
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456216genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1326.8e-413153223373
       GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                 rd +Lk+v++l+P+vv vv+++ad +s ++++r++ a +y +  +d++e+ lp+ ++ r ++E+  + ++i+nvv++eg++r+er et++kW +r++++
  678456216   3 LRDMFLKAVRTLNPTVVMVVDEDADFTSINLVNRLIAAYNYLWIPYDTMETFLPNGNKSREWYEAD-IYWKIENVVSQEGRQRVERAETKSKWVQRMRNV 101
                5899**************************************************************.********************************* PP

       GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                GF+ v++se+a  ++k++l +++ ++g + ee+++ lvl+Wk++++++++aW
  678456216 102 GFRGVAFSEEAIGEVKRMLDEHApVWGLKKEEDEQHLVLTWKGHNVIFATAW 153
                **************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.1641133IPR005202Transcription factor GRAS
PfamPF035142.3E-383153IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSLRDMFLKA VRTLNPTVVM VVDEDADFTS INLVNRLIAA YNYLWIPYDT METFLPNGNK  60
SREWYEADIY WKIENVVSQE GRQRVERAET KSKWVQRMRN VGFRGVAFSE EAIGEVKRML  120
DEHAPVWGLK KEEDEQHLVL TWKGHNVIFA TAWVPAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-152155313474Protein SHORT-ROOT
5b3h_B6e-152155259420Protein SHORT-ROOT
5b3h_E6e-152155259420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456216
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697295.13e-82PREDICTED: scarecrow-like protein 32 isoform X2
SwissprotQ9SN223e-62SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2G9HJF62e-81A0A2G9HJF6_9LAMI; Uncharacterized protein
STRINGGorai.007G221900.12e-81(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-64GRAS family protein