PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456657
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 151aa    MW: 17141.1 Da    PI: 8.3009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456657genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.23.4e-2889146158
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                ldDgy+WrKYG+K+v++ ++pr+YY+C  + Cpvkk++er+++dp++v++tYe++Hnh
  678456657  89 LDDGYRWRKYGKKMVRNRQNPRNYYKCCVPWCPVKKRIERDNDDPSYVVTTYENTHNH 146
                59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-2976146IPR003657WRKY domain
SuperFamilySSF1182908.5E-2581147IPR003657WRKY domain
PROSITE profilePS5081127.18784149IPR003657WRKY domain
SMARTSM007741.2E-2789148IPR003657WRKY domain
PfamPF031062.6E-2190146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MAGTPLNISE YLEIDGWMEA QYEEDGYGPP VTSAVPPVGG TGAISGGSSC TTAANYLHQP  60
RQIPSLEGQG GPDQVKRFVF RTRTHIDVLD DGYRWRKYGK KMVRNRQNPR NYYKCCVPWC  120
PVKKRIERDN DDPSYVVTTY ENTHNHFGPR N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2280149877Probable WRKY transcription factor 4
2lex_A2e-2280149877Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022750063.12e-37probable WRKY transcription factor 43 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-35WRKY DNA-binding protein 50