PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456875
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 368aa    MW: 42198.1 Da    PI: 8.2642
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456875genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.36.5e-2163159186
   trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +W++++v+ Li+++  +++++ ++           lkk++W+ vs +m e+gf++sp+qC++k+++lnkryk+  ++ +k+ +s+++++ ++ d+l+
  678456875  63 KWSDDMVRILITVVYFIDDDVVSEGhdkkrgggvgLKKGKWKMVSYAMIEKGFNVSPQQCEDKFNDLNKRYKRAIDILGKGnSSRVVENPSLVDKLD 159
                7*************955555443212334555666*********************************************97789999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-1761148No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSFHNHHLQL QKLLPVSQKS SKLDHPSAPN PMIQTLTLTD DEAGAESVGE NGKRKISTWK  60
RMKWSDDMVR ILITVVYFID DDVVSEGHDK KRGGGVGLKK GKWKMVSYAM IEKGFNVSPQ  120
QCEDKFNDLN KRYKRAIDIL GKGNSSRVVE NPSLVDKLDH LSPHLREEVK KLINSKHLFF  180
KEMFDYHNSC GGGAGFHHES APNPQQQQKG RMLSNPPNVY EEAESDETDE EDGNEMSDET  240
DELASRKILK GKGVEYSGVV QELEADVMSV LQDGAKNMME KSEWMKRRLT GLEQRGVNIA  300
SQAFELEKEK LRWMKFSKKK EKELETEKLT NERLKLENER MALIIRGKQL DLLRHHHLLP  360
TPLSVHRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456875
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101476.11e-112uncharacterized protein LOC105179522
TrEMBLA0A2G9GXC21e-102A0A2G9GXC2_9LAMI; Transcription factor GT-2
STRINGcassava4.1_006702m6e-95(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-63sequence-specific DNA binding transcription factors