PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456998
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 210aa    MW: 21656.8 Da    PI: 7.8406
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456998genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001187109123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ C+k Fs+   L  H  +H
  678456998  87 YKCTVCDKAFSSYQALGGHKASH 109
                9***********99999998887 PP
2zf-C2H216.91.8e-05137159123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ CgksF++   L  H r+H
  678456998 137 HECSVCGKSFPTGQALGGHKRKH 159
                78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.2E-1387111IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.90587114IPR007087Zinc finger, C2H2
SMARTSM003550.007887109IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-487109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.41E-987159No hitNo description
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-4135159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-13137161IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45137159IPR007087Zinc finger, C2H2
SMARTSM003550.011137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MALDALNSTA LPTSTKITRR LEDIGAWTES DRSKRHRGGG GGGVCDSSMT EEEYLAFCLI  60
MLARGGGGAD AVYSSATPSA PVDGGGYKCT VCDKAFSSYQ ALGGHKASHR SRPPVASSPS  120
GESTAVNDSS NPIGRIHECS VCGKSFPTGQ ALGGHKRKHY EGVIGGAKSR TSSSTGNQPS  180
VPRSFDLNRP ASPDPQGEEA AESGDTLPKP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456998
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088065.11e-53zinc finger protein AZF2-like
TrEMBLA0A4D8YBY44e-49A0A4D8YBY4_SALSN; Transcription initiation factor TFIIA small subunit
TrEMBLA0A4D9BGD61e-49A0A4D9BGD6_SALSN; Uncharacterized protein
STRINGGorai.002G132600.11e-44(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.12e-41zinc-finger protein 3