PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678457245

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C3H

Protein Properties

Length: 410aa MW: 44759.2 Da PI: 6.2884

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678457245	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.8e-06	360	381	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff C+ G++C+F H 678457245 360 KPCTFFNTPKGCRNGANCPFLH 381 69******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.906	357	384	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-4	360	381	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-4	360	382	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	361	388	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MFLLEESPSE VGFGTQDHLQ AKASGSALHE ILGSNGNQPP GFEGFQHANS WGVKLSQIPL 60 VKWNLPTRFQ VNREWSLVAG EESTEVEFQN RRESGVLEAI YPRPSAIPPN PCGLDAVEYS 120 NHTEETPVIP LTPIEEEDTS IEVQPGCNPA GNVQSGSGGS DVMASWTSIM AGKDQGNLID 180 RELLIKILSD RKVIEQCIAS HSRSSSDSKS IASSTQILTH CSYFPSFTSN SNQQHITSSR 240 APGAQPIRLQ GLTSNYIPMA PLNSAAAQFI RPDVIPPAGP AYFTPVPIPG IWNSPAEVNS 300 TTSPSMAVPV TKDISYYKSL IQQHGGERRE PTPTPQFNTQ SGQEQMFMGK PRDTKHKIMK 360 PCTFFNTPKG CRNGANCPFL HELAHQQRVD TASEVPGTKR LKLDREITSL

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MFLLEESPSE VGFGTQDHLQ AKASGSALHE ILGSNGNQPP GFEGFQHANS WGVKLSQIPL  60
VKWNLPTRFQ VNREWSLVAG EESTEVEFQN RRESGVLEAI YPRPSAIPPN PCGLDAVEYS  120
NHTEETPVIP LTPIEEEDTS IEVQPGCNPA GNVQSGSGGS DVMASWTSIM AGKDQGNLID  180
RELLIKILSD RKVIEQCIAS HSRSSSDSKS IASSTQILTH CSYFPSFTSN SNQQHITSSR  240
APGAQPIRLQ GLTSNYIPMA PLNSAAAQFI RPDVIPPAGP AYFTPVPIPG IWNSPAEVNS  300
TTSPSMAVPV TKDISYYKSL IQQHGGERRE PTPTPQFNTQ SGQEQMFMGK PRDTKHKIMK  360
PCTFFNTPKG CRNGANCPFL HELAHQQRVD TASEVPGTKR LKLDREITSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678457245

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083502.1	1e-110	zinc finger CCCH domain-containing protein 6
TrEMBL	A0A4D8Z2F5	1e-102	A0A4D8Z2F5_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5147	7	9