PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678457374
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 1112aa    MW: 122618 Da    PI: 6.8113
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678457374genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.6e-22175276199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l++
  678457374 175 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLIAGDSVLFI--RDEKQQLLL 271
                99*****************************9445444.38************************************************..5688889** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  678457374 272 GIRRA 276
                **997 PP
2Auxin_resp115.45e-38301384183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++++ ka+  +++s+GmRf+m+fete+s +rr++Gt++g sdldp+rW+nS+Wr+L+
   678457374 301 AAHAATNSSPFTVFYNPRASPSEFVIPLARYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGSSDLDPIRWKNSQWRNLQ 384
                 79*****************************9998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-40166290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-43166304IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-19174266No hitNo description
PfamPF023621.4E-20175276IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928175277IPR003340B3 DNA binding domain
SMARTSM010197.5E-22175277IPR003340B3 DNA binding domain
PfamPF065073.8E-33301384IPR010525Auxin response factor
PfamPF023096.2E-710001086IPR033389AUX/IAA domain
PROSITE profilePS5174527.59310011085IPR000270PB1 domain
SuperFamilySSF542772.42E-710131079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MKAPSGGGSA TAAPRANASS TSEGLLFLSF QICMDRNAFY FFFFLVVWFL TTIKEPFACA  60
SGETKKSING ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ VAASMKKDMD AQIPNYPNLP  120
SKLICILHSI TLHADTDTDE VYAQMTLQPV PSFDKDTLLR SDLSMRASKP QMEFFCKTLT  180
ASDTSTHGGF SVPRRAAEKI FPALDFSMQP PAQELVARDL HDNLWTFRHI YRGQPKRHLL  240
TTGWSLFVSG KRLIAGDSVL FIRDEKQQLL LGIRRANRQP TNLSSSVLSS DSMHIGILAA  300
AAHAATNSSP FTVFYNPRAS PSEFVIPLAR YYKAVCSNQI SLGMRFRMMF ETEESGTRRY  360
MGTITGSSDL DPIRWKNSQW RNLQVAWDES TAGEKRNRVS IWEIEPVTAP FFICPSPPFF  420
RQKRPRQPGM PDDAYSDLDV LFRRTMPWLG DDFGVKDPQP LPGMRLAQWM NMQQNYPLAN  480
SIQTNYIPGS ALQNLAGTDI AQLGLPSMQV APHTPERPNQ QAQDQLQKLP SSSVNPVGSI  540
MSQEQQMNDA SQHPRQNLGG QNTSASIPVS QVPAQILQSQ PPLQVPNALP QQHPSLLNQQ  600
PQINVSQNLS HQQQQVSGQS LLPSQPDVLN QQLHVPENQI QLQLLQKLLQ KQNSLVSQQS  660
RMPQSSLAQM VDHPKQTMGI PPSFYQPNST VPMMDASQGT TRMEQMPQNN NQSGLRIGQL  720
HMQEKMPQQQ QSAMFSEAHG LVGGCFNPIN NQHSAGSSSI LTGAAGAGPS AVTEDVPSCS  780
YSPSTNCLNA GSSMLLLNSS AQEQMCSNNN RLKEFHLKSD VKASLSISKS HKQGVFASPM  840
CPNPPGGQID HLESQSSATS VLSQNDAHVS QNNSSMSFNV QPVVFRDEGH EMEVHGDPRN  900
GFLFGSNVEH QLASSMMSDP SMTRNIVGSA KDLSTNPSPG GGLVPTYDNL KESRPAFSSS  960
MVSHQSFGVQ DVAFNSMDST MNDNSLMSRG SWPQPPVPRM RTYTKVYKRG AVGRSIDITS  1020
YSGYDELKQD MARRFGIEGQ LEDGQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI  1080
LSPQEVQQMS LDGDFGANVI PYQTCSSSDN VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1696140544388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678457374
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553508.10.0auxin response factor 19
TrEMBLA0A2G9HCE80.0A0A2G9HCE8_9LAMI; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein