PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678457497

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 1066aa MW: 117749 Da PI: 6.7439

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678457497	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	71.5	1.5e-22	151	228	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE.-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf.CqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC+++ls ak+yhrrhk v ++ ++ s fh l+efD +krsCrrrLa+hn+rrrk + 678457497 151 VCQVDGCKENLSAAKDYHRRHKAAISIFYDVLVKLKMQMSLLnLWLSSMFHLLREFDAGKRSCRRRLAGHNRRRRKIH 228 6*******************987766666666555544441456899************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-13	146	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.572	149	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.45E-18	150	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.2E-11	152	226	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	4.4E-4	815	960	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.37E-5	815	957	No hit	No description
PROSITE profile	PS50297	8.587	898	968	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1066 aa Download sequence Send to blast
MEEAGGQVIT PIADYQNLVG RFCDSYPTSK KRGVSVHAPN AAYPDTSETW NANSWDWDPT 60 RFVAKPLQCD DVIVVGGQGI LRRNDDQSND SNPRMVHPTR EDQENIFLKL GGDSSAKSGT 120 SGETDSEELQ PSSKPVKRVR AGSPGGANYP VCQVDGCKEN LSAAKDYHRR HKAAISIFYD 180 VLVKLKMQMS LLNLWLSSMF HLLREFDAGK RSCRRRLAGH NRRRRKIHSE DSNTQLLAPQ 240 NRDKNISDVD LVNLLAMLSQ AQHNNRDTNR SFPNKDQLAQ IIGNMNSSLP ETLGPKLKGC 300 VPRHVNSVNQ NSTDKENTSL PSTRDLLAVL TATSPAPRTH DSQSDQTSAE GSESEKSKSS 360 CVNEVAHLNF HSGVTREFPF VGQSSRITSS PPLGDGELNV IETPPSLPLQ LFSSSHDDQH 420 LRKGQDCNVL SAQFKNPSRE AFQLSSKLVV HDFFAMHSSR ENPKDGNLPS GEVELPYLRG 480 NTSNFCSTSL QLYGGPSRLG ENVSFQESHN HMEQPSTSGS YYSTALKSDC QDQTGRIIFK 540 LFDKDPSHLP GSLRTQIYNW LSNSPSDMES YIRPGCILLS VYVAMSPIEW DKLEENLLNY 600 LKMLVDVIDS RFWGAGRFLV HTNRQMAISN GGRIRLCKSG RAGSVPQLIS VSPLAVVSTE 660 ETSILLKGTR LLASSTMIHC THAMGYCIEK HTSSSQNSMY DEILLVGFKV EGASTNRLGR 720 CFIEVENGSR AASFPIIIAD KAICQELKFL EPEIDCRLEI GDGIPTYVAE DEDRSDSREW 780 ALHFLNELGW LFQRKNNSSP SAFQDYSLTR LKFLLMFSVE HDFCAVVKTL LDILAEMNLC 840 QEGLVGDSLE MLSEIQLLTR AVRRRCQGMV NKLIHYSIID PVDNSKKYIF RSDVAGPGGI 900 TPLHLAASLP NAASIVDALT CDPLEVGLRS WGSVLDEQGL SPLEYASVSN NHSYNSLVAQ 960 KLADKSNDQA SISIDNAEQL SVEIDGHKNP SNLRPGTQPC SKCAVVAALG YSRKISGPPA 1020 LLHRSYIHSI LVVAAVCVCV CLLLRGRPFV GYSPPFAWET LDYGAF

Sequence ? help Back to Top

Protein Sequence Length: 1066 aa Download sequence Send to blast

MEEAGGQVIT PIADYQNLVG RFCDSYPTSK KRGVSVHAPN AAYPDTSETW NANSWDWDPT  60
RFVAKPLQCD DVIVVGGQGI LRRNDDQSND SNPRMVHPTR EDQENIFLKL GGDSSAKSGT  120
SGETDSEELQ PSSKPVKRVR AGSPGGANYP VCQVDGCKEN LSAAKDYHRR HKAAISIFYD  180
VLVKLKMQMS LLNLWLSSMF HLLREFDAGK RSCRRRLAGH NRRRRKIHSE DSNTQLLAPQ  240
NRDKNISDVD LVNLLAMLSQ AQHNNRDTNR SFPNKDQLAQ IIGNMNSSLP ETLGPKLKGC  300
VPRHVNSVNQ NSTDKENTSL PSTRDLLAVL TATSPAPRTH DSQSDQTSAE GSESEKSKSS  360
CVNEVAHLNF HSGVTREFPF VGQSSRITSS PPLGDGELNV IETPPSLPLQ LFSSSHDDQH  420
LRKGQDCNVL SAQFKNPSRE AFQLSSKLVV HDFFAMHSSR ENPKDGNLPS GEVELPYLRG  480
NTSNFCSTSL QLYGGPSRLG ENVSFQESHN HMEQPSTSGS YYSTALKSDC QDQTGRIIFK  540
LFDKDPSHLP GSLRTQIYNW LSNSPSDMES YIRPGCILLS VYVAMSPIEW DKLEENLLNY  600
LKMLVDVIDS RFWGAGRFLV HTNRQMAISN GGRIRLCKSG RAGSVPQLIS VSPLAVVSTE  660
ETSILLKGTR LLASSTMIHC THAMGYCIEK HTSSSQNSMY DEILLVGFKV EGASTNRLGR  720
CFIEVENGSR AASFPIIIAD KAICQELKFL EPEIDCRLEI GDGIPTYVAE DEDRSDSREW  780
ALHFLNELGW LFQRKNNSSP SAFQDYSLTR LKFLLMFSVE HDFCAVVKTL LDILAEMNLC  840
QEGLVGDSLE MLSEIQLLTR AVRRRCQGMV NKLIHYSIID PVDNSKKYIF RSDVAGPGGI  900
TPLHLAASLP NAASIVDALT CDPLEVGLRS WGSVLDEQGL SPLEYASVSN NHSYNSLVAQ  960
KLADKSNDQA SISIDNAEQL SVEIDGHKNP SNLRPGTQPC SKCAVVAALG YSRKISGPPA  1020
LLHRSYIHSI LVVAAVCVCV CLLLRGRPFV GYSPPFAWET LDYGAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-15	142	226	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00664	PBM	Transfer from Potri.002G002400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678457497

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083361.1	0.0	squamosa promoter-binding-like protein 14
TrEMBL	A0A2G9GTF7	0.0	A0A2G9GTF7_9LAMI; Uncharacterized protein
STRING	Migut.C00339.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	0.0	SBP family protein