PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678457671
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 272aa    MW: 28583.8 Da    PI: 8.8459
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678457671genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-0878103227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                k ++C+ +     CkyGd+C+FaHg+
  678457671  78 KSKICNKYKTAEGCKYGDKCHFAHGE 103
                5679********************96 PP
2zf-CCCH37.15.2e-12239263126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC +fa+ G C +GdrC+FaHg
  678457671 239 FKTKLCENFAK-GSCTFGDRCHFAHG 263
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356802040IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.1792841IPR000571Zinc finger, CCCH-type
PfamPF146081.12838No hitNo description
Gene3DG3DSA:4.10.1000.101.7E-1473107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-874107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.18876104IPR000571Zinc finger, CCCH-type
SMARTSM003560.003978103IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-678103IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.51E-14138215IPR004088K Homology domain, type 1
SMARTSM003222.3E-12144214IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.1E-14144213IPR004088K Homology domain, type 1
PROSITE profilePS5008414.236145209IPR004088K Homology domain, type 1
CDDcd001051.25E-13147209No hitNo description
PfamPF000131.1E-11147211IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.1E-16236269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.596238265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8238268IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8238264IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9239263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSARYLAYIR LSLDFTQGDM LQLCITGCPF GESCHFLHYV PGGYNAVAQM MNLPPIPSSK  60
PAATPVPVQN ISSPPMVKSK ICNKYKTAEG CKYGDKCHFA HGEWELGKPI ASSQNDLRIA  120
TAIPGHFGLR PEPSIPSPAS SFGASATAKI SVDASLAGAV IGRGGANSKN ICRLTGVKLS  180
VRDHEVDPSL KNIELEGTLE QIQQASAMVR ELIVSLGAAA AAAGPRKSLG GPAGPGSNFK  240
TKLCENFAKG SCTFGDRCHF AHGAAELRKT GI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678457671
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-133zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R03e-93C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9VFC91e-120A0A2C9VFC9_MANES; Uncharacterized protein
STRINGcassava4.1_013023m1e-120(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-69C3H family protein