PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678457698
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 352aa    MW: 38888.9 Da    PI: 7.9521
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678457698genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17e-09133153526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C++f++ G Ck+Gd+C +aHg
  678457698 133 ACPDFRK-GACKRGDSCEYAHG 153
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.44E-5127157IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6128154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817129155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5132155IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-7133153IPR000571Zinc finger, CCCH-type
SMARTSM0035616163186IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.155163187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMMTGNQLRF HPTVQIPVWD HHYLEDPTAA MVQSPPIPHG GFSSGAGSPD AAAALLALQR  60
YLPSNLDDIG GVDGEDFDIP VDAFSCDDFR MFEFKVKKCS LARSHDWTAC PFAHPGEKAR  120
RRDPRKYHYS GTACPDFRKG ACKRGDSCEY AHGVFECWLH PARYRTQPCK DGTHCRRRVC  180
FFAHTPEQLR LLPYSSPEAS PGRFPPQDLF GASPKSALYS PPSSPPTTGS PPEYSMNLSQ  240
LAGSMGRLHI HKMKMNLGLS GSPPAWGVGI GSPPSTRPGF LSLPTTPIHG RKARPPTTAF  300
DPWGPLFEEE PAVERVESGR ELRERIYAKL GKENSLERGG SRVDPDQEFG WA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678457698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094664.11e-161zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G23e-97C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLS8C0141e-156S8C014_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.E01548.1.p1e-142(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-91C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]