PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678457731
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YC
Protein Properties Length: 229aa    MW: 25696.8 Da    PI: 9.3514
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678457731genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC292.3e-091312111899
      NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  ++P+ r+k i+k de   ++s ea  l+ ka e f+  +t  ++l a   +++      ++ +v++ + f fl d vp+ 
  678457731 131 ACRFPMNRVKLIIK-DEIPDRVSQEAVFLINKATEKFLQLFTKEAYLSASLDQKHHTAYDHLSFVVSKGKRFSFLSDFVPER 211
                4679*********9.566689*****************************9999999999*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008088.6E-11133195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-16134210IPR009072Histone-fold
SuperFamilySSF471131.51E-13150210IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAKRRRVAAA KSRNQKNRKR SKNLSAIESP PPKAKATNRG RKLKALPTST AAGDSSEELE  60
DDAAQLSGPK SQEEDVSDEN EGSMSGGDEE KRPLKSAKGK GKEDVRNKGR KRIMKEEDDD  120
DDDEERGENL ACRFPMNRVK LIIKDEIPDR VSQEAVFLIN KATEKFLQLF TKEAYLSASL  180
DQKHHTAYDH LSFVVSKGKR FSFLSDFVPE RMKAEEALAQ ISEVEKSQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMap678457731
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089889.12e-37protein MNN4 isoform X1
TrEMBLA0A2G9IAE21e-42A0A2G9IAE2_9LAMI; DNA-directed DNA polymerase
STRINGPOPTR_0009s01750.13e-30(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.18e-25nuclear factor Y, subunit C10