PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678457978

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

YABBY

Protein Properties

Length: 179aa MW: 20072 Da PI: 9.1093

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678457978	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	204.7	3.5e-63	3	156	3	169
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv.ssekl 101 ++e+vCyv C+fCntilavsvP s+f++vtvrCGhC++llsvn+ + q l ++ +ll+ ++++ + ++e ++s++ + ++ 678457978 3 SEMTTERVCYVYCGFCNTILAVSVPWGSMFTIVTVRCGHCANLLSVNMGASLQPLHHLQE------FQLLK-----QQSMMEAAVREGASSSKFnRFGSF 91 56799**************************************999887766654443......22333.....333333333333333333022233 PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 n + + pp irPPekrqrvPsaynrfi+eeiqrika+nP+ishreafs+aaknWahfP+ hfg 678457978 92 HPNPPKMM---PPPIRPPEKRQRVPSAYNRFIREEIQRIKANNPEISHREAFSTAAKNWAHFPHTHFG 156 34444444...467***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.7E-68	6	156	IPR006780	YABBY protein
SuperFamily	SSF47095	3.01E-8	94	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.9E-5	105	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MSSEMTTERV CYVYCGFCNT ILAVSVPWGS MFTIVTVRCG HCANLLSVNM GASLQPLHHL 60 QEFQLLKQQS MMEAAVREGA SSSKFNRFGS FHPNPPKMMP PPIRPPEKRQ RVPSAYNRFI 120 REEIQRIKAN NPEISHREAF STAAKNWAHF PHTHFGDGNK QGKDHLPVAG EPTSNAFGC

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678457978

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088989.1	4e-84	putative axial regulator YABBY 2 isoform X1
Refseq	XP_011088990.1	4e-84	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	2e-69	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0X9RCW2	3e-79	A0A0X9RCW2_MENSP; YABBY family protein 2
STRING	VIT_06s0009g00880.t01	3e-74	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-65	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]