PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678458259
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 266aa    MW: 29814.9 Da    PI: 7.9796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678458259genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05125144120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  678458259 125 FSCPVCYKTFNRYNNMQMHM 144
                89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-5121147No hitNo description
Gene3DG3DSA:3.30.160.604.3E-6125144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743125152IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-5191229No hitNo description
Gene3DG3DSA:3.30.160.604.0E-4205229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
FQSSICQPSS SNTFTSPPLL EALPLLRLTP TTSDEKNTLF DAKKTDLVKD GDNGVTVALH  60
IGLPNPDLAA SLMSCESGDK EEEDEEEEED EETDPDLSGL LISRINKGQY WIPTPSQILI  120
GPTQFSCPVC YKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTGMLRLP CYCCAPGCRN  180
NIDTPRAKPL KDFRTLQTHY KRKHGMKPFM CRKCGKALAV RGDWRTHEKN CGKLWYCACG  240
SDFKHKRSLK DHIKTFGSGH AAIGPD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678458259
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521192.11e-134zinc finger protein WIP2
RefseqXP_028225335.11e-134zinc finger protein WIP2-like
SwissprotQ9SVY11e-121ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0R0KIS41e-132A0A0R0KIS4_SOYBN; Uncharacterized protein
TrEMBLA0A2Z7CH791e-133A0A2Z7CH79_9LAMI; Uncharacterized protein
TrEMBLA0A445LBY51e-132A0A445LBY5_GLYSO; Zinc finger protein WIP2
STRINGGLYMA03G29610.21e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]