PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678458552
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 333aa    MW: 37209.6 Da    PI: 5.8061
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678458552genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.3e-29122182259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 Dgy+WrKYGqK++ g+++prsYYrCt++   +C + k+v+rs++dp+v+e+tY+g+H+++
  678458552 122 MDGYSWRKYGQKDILGAKYPRSYYRCTYRllrNCGAMKQVQRSDTDPDVFEVTYKGDHTCT 182
                5***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-28116183IPR003657WRKY domain
SuperFamilySSF1182901.26E-24121182IPR003657WRKY domain
SMARTSM007742.2E-36121183IPR003657WRKY domain
PROSITE profilePS5081121.551123179IPR003657WRKY domain
PfamPF031068.0E-27123181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MESALVLEHR KLVDELSEGM EKAQQLEKHL SFMYPCGADA FLVQRIRSSF ENALRIVNSG  60
ARPATVESAT VDSLAPADES PRIYDKSRIV QHGDAAKKRK LIGTRKELVR VNSKNGLEGP  120
SMDGYSWRKY GQKDILGAKY PRSYYRCTYR LLRNCGAMKQ VQRSDTDPDV FEVTYKGDHT  180
CTQGQPSDPK PESLLGLQPE SNNSHYHQIR QPNDTLHHMK TSLRVETQAL NTPEMAAYDP  240
FLSSNFSGLV GEQHYSPIPA LDDDSGMNSY SSQAFNSPVT PDSETIHQMS SLPKEAPMET  300
TTPASTTSEG MIFPIYDLDV DPTFLFDMAG FPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-181231791874Disease resistance protein RRS1
5w3x_D1e-181231791874Disease resistance protein RRS1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678458552
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551475.12e-84probable WRKY transcription factor 53
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-41WRKY family protein