PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678458974

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 367aa MW: 41708.8 Da PI: 8.1508

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678458974	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.5	1.3e-32	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rF eav+qLGG+ekAtPk++l+lm+++gLtl+h+kSHLQkYRl 678458974 32 KPRLKWTPDLHQRFTEAVNQLGGAEKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 86 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.646	29	89	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-31	30	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-16	31	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-23	32	87	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-9	34	85	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-18	125	170	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MFHHHQQGRN GYHSSEKHRP RDARLVLSTD AKPRLKWTPD LHQRFTEAVN QLGGAEKATP 60 KSVLKLMGIQ GLTLYHLKSH LQKYRLSKSH QGNSTAAKPA WRQAEVLGTQ TGIPRIATQQ 120 TRNVRIEEAN QMEIEVQQQL HEELEIQRHL QLRIEAQGKY LHSVLEKAHD TLWRQNMGAI 180 DVEAAKAQLS ELVSNVSSQS LNSIKEIQDF FQRQNKMAAA RKDSSTESCL TMPSIRDQEL 240 LLHAPSYFEE KTAQITENKT SQRSIELRRH ECGKESKDYI SSGNLYMGVD FSNDNNLLNM 300 FMSNGLSGGN QGSRRNRIEV FKGSEVEAEK QVTYSDMKLA LFSRALDLNA EGENEGDLSC 360 RELDLNS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MFHHHQQGRN GYHSSEKHRP RDARLVLSTD AKPRLKWTPD LHQRFTEAVN QLGGAEKATP  60
KSVLKLMGIQ GLTLYHLKSH LQKYRLSKSH QGNSTAAKPA WRQAEVLGTQ TGIPRIATQQ  120
TRNVRIEEAN QMEIEVQQQL HEELEIQRHL QLRIEAQGKY LHSVLEKAHD TLWRQNMGAI  180
DVEAAKAQLS ELVSNVSSQS LNSIKEIQDF FQRQNKMAAA RKDSSTESCL TMPSIRDQEL  240
LLHAPSYFEE KTAQITENKT SQRSIELRRH ECGKESKDYI SSGNLYMGVD FSNDNNLLNM  300
FMSNGLSGGN QGSRRNRIEV FKGSEVEAEK QVTYSDMKLA LFSRALDLNA EGENEGDLSC  360
RELDLNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678458974

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022882948.1	1e-101	myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	2e-75	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A4D8ZZ20	3e-98	A0A4D8ZZ20_SALSN; Uncharacterized protein
STRING	XP_009758035.1	4e-95	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-68	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]