PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678459578
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 243aa    MW: 27775.2 Da    PI: 6.3223
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678459578genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.9e-18143196356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++++eq+++Lee++e +  +  ++++ LA++lgL  rqV +WFqNrRa+ k
  678459578 143 KKRRLKPEQVRALEEVYEVETMLGPHRKQLLADELGLHPRQVAIWFQNRRARCK 196
                56689***********************************************98 PP
2HD-ZIP_I/II108.74.1e-35142232191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv++LEe +e e+ L p+rK+ la eLgl+prqva+WFqnrRAR k+  lEk+y++L+++y++l++++ ++ +e+++Lr+++
    678459578 142 EKKRRLKPEQVRALEEVYEVETMLGPHRKQLLADELGLHPRQVAIWFQNRRARCKSSLLEKEYDTLRAQYEKLNSDHVAIFAENQKLRNQV 232
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532138198IPR001356Homeobox domain
SMARTSM003896.4E-17141202IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.3E-17143196IPR009057Homeodomain-like
CDDcd000867.03E-15143198No hitNo description
PfamPF000464.0E-15143196IPR001356Homeobox domain
SuperFamilySSF466891.2E-16143208IPR009057Homeodomain-like
PRINTSPR000317.4E-5169178IPR000047Helix-turn-helix motif
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
PRINTSPR000317.4E-5178194IPR000047Helix-turn-helix motif
PfamPF021832.3E-10200232IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQHEIGGFER FFKYGWKGRR RYPGGIAGHT WQSGDEEGKM DSHIPEEGIH EELMHLAAST  60
KVTFPFPSIY LLAAGRRVAA LLLESKKAME DLSPISENEF SPREVFGGES FSIQSFPLGS  120
TTGFDADRLT GNVEGQSDEL EEKKRRLKPE QVRALEEVYE VETMLGPHRK QLLADELGLH  180
PRQVAIWFQN RRARCKSSLL EKEYDTLRAQ YEKLNSDHVA IFAENQKLRN QVPFPSTDNP  240
NRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147KKRRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678459578
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-24homeobox 1