PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678459746
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARR-B
Protein Properties Length: 449aa    MW: 50663.8 Da    PI: 6.5567
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678459746genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.39.7e-25188241155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r++Wt +LH++Fv+av+++ G ek  Pk+il+lm+v+ Lt+ehv+SHLQkYRl
  678459746 188 KARVVWTVDLHQKFVQAVNHI-GLEKVGPKKILDLMGVPWLTREHVASHLQKYRL 241
                68*******************.9*******************************7 PP
2Response_reg82.71.2e-27221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev+++  ++eal ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
     678459746  22 VLVVDDDPTWLKILEKMLKKCSY-EVTTCNLAREALSLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 116
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
     678459746 117 DYLLKPIRMKELRN 130
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.69E-3619140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.4E-4519151No hitNo description
SMARTSM004483.8E-3220132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.42721136IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.4E-2522131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.82E-3023136No hitNo description
PROSITE profilePS512949.789185244IPR017930Myb domain
SuperFamilySSF466891.97E-17186245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-27187245IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-23188242IPR006447Myb domain, plants
PfamPF002491.3E-7190240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MMDSGGFSSR RAAEAFPAGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCN LAREALSLLR  60
ERKDGFDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMKG VQHGACDYLL  120
KPIRMKELRN IWQHVFRKRI HEGIEDSQFM KSLGEQSEDG YCDLGKRKRD DERVCSDACS  180
SSTNMMKKAR VVWTVDLHQK FVQAVNHIGL EKVGPKKILD LMGVPWLTRE HVASHLQKYR  240
LFLSRLEREN ELKAAFTGTK ASEASKVWTE DPCLQTSGSM AKLVKESNIL IHNMPKPGAS  300
VFSFTDLKAK PFMKLQPFQL NQESHPHFCS DNRTNSLKHH HSILGGSKEV ERICTSESDS  360
SGNVLGQTDL GSAQRSLIHG YGSAFEAWNQ DFSDVVSTDF YPFCAGIESM AHGNQAGAPE  420
LSHDLWKFET EYQSDVTEYQ VIGKDLYII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17187246463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678459746
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071178.11e-148two-component response regulator ORR26
SwissprotQ5N6V81e-119ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A022Q1S71e-146A0A022Q1S7_ERYGU; Uncharacterized protein
STRINGMigut.E00229.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-106response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]