PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678459845
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 610aa    MW: 67147.6 Da    PI: 5.3484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678459845genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.73.7e-17250299255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r +h++ E+rRR++iN++f++Lre++P++     +K +Ka+ L +++eYI+ Lq
  678459845 250 RSKHSATEQRRRSKINDRFQKLREVIPNS----EQKKDKASFLLEVIEYIQFLQ 299
                899*************************8....7999****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-18245317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-22245321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.812248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-14250302No hitNo description
PfamPF000101.5E-14250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-12254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MELPQSRPLE TKGGKATHDF LSLYASSPSN QDPTPPQGSF VVTHDFLQPL ERVGPTDRED  60
NFAGMAAVGN RPPWPAECGT MDPLLPGAIG GYNISYIGQR VSETERNGML AARTSSAHEN  120
DESIFRRWDE YAIVKGKTGK ENAATSRSNL PGMDMVGGEW TSSVLERTSW SPSKQKNTIA  180
PLSSVSSLPP LPSKKKQSFI EIITAAKSSQ GEDEDDMVIK SDTPSHSPLK GSVSLKLENK  240
ALNQKSNTIR SKHSATEQRR RSKINDRFQK LREVIPNSEQ KKDKASFLLE VIEYIQFLQD  300
RVNRYESPYN IWKHEPAKMM QWKNDHIANK QGADTDSGPV LAPAMTFDGN KAVLSPGIPS  360
IGQNLSDSDL TTAKTKEGGQ LVPASALNGT ESPTTINAFS YVAAATSSDA DKTMKWNPLQ  420
SQQMRSSGPE DMISMVDRKM NDHQGQQSTE SGTASISSIY SQGLVNNIAQ ALQRSGINLS  480
QSRVSVKINL GKRANGSIHC STSTAKENHV AAKSTGEDMR FASKKQKRKA EDIDTHMEYE  540
SDFEFDYGSE EKDYEILDDQ FPIENDDYGQ ALEIPMSEGI QSEAPQNETS EGPLNIIRME  600
SDSVRIQELV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678459845
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078688.11e-145transcription factor BIM1 isoform X2
TrEMBLA0A2G9G0J51e-147A0A2G9G0J5_9LAMI; Uncharacterized protein
STRINGMigut.D01611.1.p1e-120(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-66bHLH family protein