PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460014
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 198aa    MW: 22423.2 Da    PI: 7.3496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460014genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-054870123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C++ F++   L  H+++H
  678460014 48 YSCSFCKREFKSAQALGGHMNVH 70
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-64575No hitNo description
Gene3DG3DSA:3.30.160.602.3E-44674IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-64871IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.0714875IPR007087Zinc finger, C2H2
SMARTSM003550.00524870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGESGKWLWE NKQPQSMNDL PMGEEDEEEA VFGSGVGGIS YIWPPRSYSC SFCKREFKSA  60
QALGGHMNVH RGDRAKMKQS LVASPPNFET RPWVSSPSSK GMRVSSPRPN NFIMIDEGSL  120
PSPQENEKKK SMAVEFDFRS GKKRDGSMSF RSVVYGDFEE EMLGCRKRKT EEKTLNFFSK  180
ARTFDDLDLE LRLGDAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134370229superman protein
2l1o_A2e-134370229Transcriptional regulator SUPERMAN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094902.11e-29zinc finger protein 10
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.18e-22C2H2 family protein