PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678460233

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 212aa MW: 22814.7 Da PI: 8.56

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678460233	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	71.9	1.3e-22	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C +Ckvlr++C+++C l + p++q++++ +++k++G++ +++ll+ + + r+++ +sl+ eA+ r+ +P+ G+vg++ +++++ ++ +++++ 678460233 2 SCHGCKVLRKACSENCLLKDSLqwiesPQSQANATVFLAKFYGRTGLMNLLACAAADSRSQVCRSLLSEACGRVINPIGGSVGLYASGEWKRCEDAVQAV 101 6******************************************************************************************999988876 PP DUF260 96 l 96 l 678460233 102 L 102 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.113	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-18	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MSCHGCKVLR KACSENCLLK DSLQWIESPQ SQANATVFLA KFYGRTGLMN LLACAAADSR 60 SQVCRSLLSE ACGRVINPIG GSVGLYASGE WKRCEDAVQA VLDGGPLLKK VSENGNAEWQ 120 FPVLPDQGCD IRHVPKDSSS MNRSKQRRRV KNDSPRSNAR LPSSNYPGPG YFTIAGTQYT 180 GEECLLSSWT STSAVAARDG DSNGAHLSLG KP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678460233

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070804.1	9e-57	LOB domain-containing protein 40-like
Swissprot	Q9M886	5e-46	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2G9HYG4	3e-57	A0A2G9HYG4_9LAMI; Uncharacterized protein
STRING	Migut.E00341.1.p	3e-53	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-48	LOB domain-containing protein 41