PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678460325

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WOX

Protein Properties

Length: 261aa MW: 29466.4 Da PI: 9.1235

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678460325	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.2e-19	71	130	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++t+eql+ Lee++++ r+p+ ee++++ +kl +++ ++V++WFqN++a+ek+ 678460325 71 GRWSPTREQLQFLEEMYRRgIRTPTSEEIQQIVSKLrrfgRIEGKNVFYWFQNHKAREKQ 130 6***************99************************************97 PP
2	Wus_type_Homeobox	108.2	4.9e-35	70	132	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + RW+Pt eQ++ Lee+y++G+rtP++eeiq+i ++L+++G+ie+kNVfyWFQN+kaRe+qk+ 678460325 70 SGRWSPTREQLQFLEEMYRRGIRTPTSEEIQQIVSKLRRFGRIEGKNVFYWFQNHKAREKQKK 132 67***********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.175	66	131	IPR001356	Homeobox domain
SMART	SM00389	1.1E-4	68	135	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-12	71	135	IPR009057	Homeodomain-like
Pfam	PF00046	9.8E-17	72	130	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-8	72	131	IPR009057	Homeodomain-like
CDD	cd00086	2.72E-5	72	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MRATLMEELR RGYIQKPSPI AASILQAGRF QGKADSCMGH HPWDQCLAGG LMDYGVKWEK 60 SIITEKMVMS GRWSPTREQL QFLEEMYRRG IRTPTSEEIQ QIVSKLRRFG RIEGKNVFYW 120 FQNHKAREKQ KKRRLLEPLA VCKFEISEQT KESGMLSRQL TEAQQGMQTQ TQTQTAAAEA 180 RRPFALSLED FSADKVTDQI EGNAYEHRLA ARASSKDTQT LELFPVKGNG GGGGGGDEED 240 GAVRGTASEN QFIEFLPLRA S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678460325

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4681	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	8e-30	WUSCHEL related homeobox 1