PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460592
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family RAV
Protein Properties Length: 312aa    MW: 35511.4 Da    PI: 9.9088
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460592genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-122977155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               s++kGV   + +grW A+I++      r +r++lg+f  ++ Aa+a++ a++k++g
  678460592 29 SRFKGVVPQP-NGRWGAQIYE------RhRRIWLGTFNEEDTAARAYDTAAQKFRG 77
               689***9788.8*********......44**********99*************98 PP
2B3100.69.4e-32151251197
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k+ tpsdv+k++rlv+pk+ ae+h    +g+  +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++  +e++l++ +
  678460592 151 FEKAVTPSDVGKLNRLVIPKQQAEKHfplqNGSISKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKDLRPGDIVCFQRSTGQERQLFIDW 250
                89***************************95556799**************************************************8866888889888 PP

                E CS
         B3  97 f 97 
                +
  678460592 251 R 251
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-162985IPR016177DNA-binding domain
PfamPF008471.0E-72977IPR001471AP2/ERF domain
CDDcd000181.35E-232987No hitNo description
Gene3DG3DSA:3.30.730.103.8E-193085IPR001471AP2/ERF domain
PROSITE profilePS5103219.7833085IPR001471AP2/ERF domain
SMARTSM003804.4E-283091IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.3E-39146252IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-28150239No hitNo description
SuperFamilySSF1019361.44E-29150251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.916151254IPR003340B3 DNA binding domain
PfamPF023622.9E-28151252IPR003340B3 DNA binding domain
SMARTSM010195.4E-25151254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEGSCVEDSL SQLLTETGAE VESRKLPSSR FKGVVPQPNG RWGAQIYERH RRIWLGTFNE  60
EDTAARAYDT AAQKFRGRDA VTNFKALSED EMEAAFLNAH SKDEIVDMLR KHTYQDEFQH  120
SRKSFVAGKK PFFLSAFPGV RPAEHYREQL FEKAVTPSDV GKLNRLVIPK QQAEKHFPLQ  180
NGSISKGVLL NFEDAGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKDLRP GDIVCFQRST  240
GQERQLFIDW RPGNVVGSVQ LIQPIQMVRL FGVNIFEVPA GDGGACGRGK RMREMEALGL  300
QCTKKQRIIN AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-5514825111115DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460592
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077234.11e-157AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9C6M51e-130RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLW8CWZ41e-156W8CWZ4_OLEEU; Tempranillo
STRINGMigut.E00306.1.p1e-148(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-133RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]