PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678460598

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

FAR1

Protein Properties

Length: 890aa MW: 100237 Da PI: 8.0001

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678460598	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38	5.5e-12	55	127	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF++r + + + + + + r++vC+++g++++ +C+a +++++ +++kw+vtk++++H+H+++ 678460598 55 FYEHYARNTGFRIRENVKPAR-SDSTSIFRELVCTRSGSSKRG---------------ASCEAAVVIELVSQNKWVVTKFVKDHTHAIS 127 9***********9987766.6666899*****87663...............57************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-8	55	127	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-26	262	354	IPR018289	MULE transposase domain
Pfam	PF04434	4.7E-10	529	573	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.053	540	576	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-7	551	578	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence Send to blast
MQKRGRITDD FSDDYNNGEI NPREQSLTED VGVDGTFHEP HIGMEFDSED TARMFYEHYA 60 RNTGFRIREN VKPARSDSTS IFRELVCTRS GSSKRGASCE AAVVIELVSQ NKWVVTKFVK 120 DHTHAISHCK TPKLKHRKRS ATTTKSVVEA IPSMDLVPSG MMCVSLVGNS LPEEMTHVGS 180 NFSSSGYTFK KMGSSGYLPG YCTPERTFGK DAQNLLEYFK KMQAENPGFY YAIQLDEENR 240 MANAFWSDSR SRTAYRHFGD AVTMDTLYRV NQYRVPFAPF MGVNNHGHLI LFGCALLLDE 300 SQSTFVWLFK TFLAAMNGKA PVSITTDQDR VIKAAVAHVF PNARHCINKW HVLREGQERL 360 SQLCRAHPNF QADLDNCVNK AETVEEFESS WGSLVVKYAL QRNEWLQSIY DARQQWVPVY 420 FRDSFFAAIF SSYGRGSSFF DGYVNQQTTL PMFFRQYERA LDNSFHREVK ADLDTLCTAP 480 VLRTPSPMEK QAATVYTKSV FSKFQEELVE TFAYTANRVH GNEHNSTYRV AKFEDDRKSY 540 CVSVNVDGMK ANCSCKMFEY CGILCRHVLT VFMVTNILTL PSHYFLKRWT RNAKGIAEDP 600 DGNEVGGQAT FTTRYNSLCK EAIMFAEEAA TSSETYCAAL SVLREGRKKV DGVKKSLKVA 660 TSPSLVTGVA FDDQRTNAGL PDLAPSLWPR QDEILQRFNL NHAGVPCQPI SNPNALHISP 720 VSLSQVRAPS NEMMVLPCLK SMTWMMENKN SNTATTLALI SLKLQDSGRT PVAESCVKFS 780 VSRVTLEPML KSMAHIIDQL STSTNKVAVI NLKCLDDIQL QDTETAIGES QLKFQVSRDA 840 LGAMLRSMAY IHQQLANTRN HCSLSRILFI NTSSSVSRPL SVQMQSKEDQ

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence Send to blast

MQKRGRITDD FSDDYNNGEI NPREQSLTED VGVDGTFHEP HIGMEFDSED TARMFYEHYA  60
RNTGFRIREN VKPARSDSTS IFRELVCTRS GSSKRGASCE AAVVIELVSQ NKWVVTKFVK  120
DHTHAISHCK TPKLKHRKRS ATTTKSVVEA IPSMDLVPSG MMCVSLVGNS LPEEMTHVGS  180
NFSSSGYTFK KMGSSGYLPG YCTPERTFGK DAQNLLEYFK KMQAENPGFY YAIQLDEENR  240
MANAFWSDSR SRTAYRHFGD AVTMDTLYRV NQYRVPFAPF MGVNNHGHLI LFGCALLLDE  300
SQSTFVWLFK TFLAAMNGKA PVSITTDQDR VIKAAVAHVF PNARHCINKW HVLREGQERL  360
SQLCRAHPNF QADLDNCVNK AETVEEFESS WGSLVVKYAL QRNEWLQSIY DARQQWVPVY  420
FRDSFFAAIF SSYGRGSSFF DGYVNQQTTL PMFFRQYERA LDNSFHREVK ADLDTLCTAP  480
VLRTPSPMEK QAATVYTKSV FSKFQEELVE TFAYTANRVH GNEHNSTYRV AKFEDDRKSY  540
CVSVNVDGMK ANCSCKMFEY CGILCRHVLT VFMVTNILTL PSHYFLKRWT RNAKGIAEDP  600
DGNEVGGQAT FTTRYNSLCK EAIMFAEEAA TSSETYCAAL SVLREGRKKV DGVKKSLKVA  660
TSPSLVTGVA FDDQRTNAGL PDLAPSLWPR QDEILQRFNL NHAGVPCQPI SNPNALHISP  720
VSLSQVRAPS NEMMVLPCLK SMTWMMENKN SNTATTLALI SLKLQDSGRT PVAESCVKFS  780
VSRVTLEPML KSMAHIIDQL STSTNKVAVI NLKCLDDIQL QDTETAIGES QLKFQVSRDA  840
LGAMLRSMAY IHQQLANTRN HCSLSRILFI NTSSSVSRPL SVQMQSKEDQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678460598

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090244.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_011090246.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_011090247.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_020552429.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2G9GF54	0.0	A0A2G9GF54_9LAMI; Uncharacterized protein
STRING	Migut.N02416.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]