PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678460785

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 164aa MW: 18204.5 Da PI: 9.7208

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678460785	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H 678460785 48 FSCNFCSRKFYSSQALGGHQNAH 70 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.94E-7	45	75	No hit	No description
PROSITE profile	PS50157	11.448	48	75	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	50	70	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MEVEQSSDSR TNSPSSCIKA LFMEQEQNQE LRLFGMAPPP KESENRVFSC NFCSRKFYSS 60 QALGGHQNAH KRERKVAQRA HRFENGAGFR IEGAPNGYPT FASLPLHGSC SGAFGVQIHS 120 MLHRAGKPDV GRSPTPKFGV GLMFSNPHRL KNGQQEELDL SLKL

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678460785

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q42485	1e-20	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	A0A2Z7DH58	1e-30	A0A2Z7DH58_9LAMI; Zinc finger protein 1
STRING	PGSC0003DMT400036628	2e-27	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5827	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-24	C2H2 family protein

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]