PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460843
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARR-B
Protein Properties Length: 609aa    MW: 66068.4 Da    PI: 7.2388
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460843genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.63.2e-29214267155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++Wt+eLH +Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYR+
  678460843 214 KPRVVWTSELHLQFVNAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRI 267
                79*******************.********************************7 PP
2Response_reg72.71.4e-24351441109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+++l + +y+  + ++ +e+al+ll++++  +D++l D+ mp+mdG++llk+   e  +lp+i+++a ++++ + + +  Ga 
     678460843  35 VLVVDDDLTCLKILEKMLINCHYKGLTKCSRAEDALKLLRDHKdgYDIVLSDVHMPDMDGFNLLKHVGLEM-ELPVIMMSADDSKDVVMKGVTHGAC 130
                   89*************************************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+++e+l +
     678460843 131 DYLIKPISMEALKN 144
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-3332155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-4032180No hitNo description
SMARTSM004482.9E-2833146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.57334150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2135144IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.83E-2536149No hitNo description
SuperFamilySSF466897.35E-21211271IPR009057Homeodomain-like
PROSITE profilePS5129410.756211270IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-30213272IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-26214267IPR006447Myb domain, plants
PfamPF002493.5E-8216266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MSLVAKKPMS FAGSCVSRKK SADGVPRQFP AGLRVLVVDD DLTCLKILEK MLINCHYKGL  60
TKCSRAEDAL KLLRDHKDGY DIVLSDVHMP DMDGFNLLKH VGLEMELPVI MMSADDSKDV  120
VMKGVTHGAC DYLIKPISME ALKNIWQHVV RRKKQGSKEH SGSEDGDRAQ RQSEDVDNIS  180
SVNEAHWKGG SSKKRKEEEE DEYQERDESS TLKKPRVVWT SELHLQFVNA VNQLGIDKAV  240
PKKILELMNV PGLTRENVAS HLQKYRIYLR KLSLSQRNGV ASAFDSAFGT LHGFDYPPFA  300
AGGQLSPRGG AMGQRTIFSS ENPALGFLQQ SDCSNKLLHG IPTSIDSKQL AAALHHQSEQ  360
PFSNINMSML IPSHSSNQSS LPQMVQPPVR AQPYPHLLSD ASVLNPMPPG TSSAAAGHGG  420
FGNLHLQNLG ASASQPLAFA REQGSEFPGS SRLCPVSNTS WRNMGLSTTN ATTPDEGMKS  480
GMLVSIGSFM SSYDALDRRG GGGGNLEHQG EGAAAAGVCP ETKNNSSPSS SSVVPTCTGD  540
SSSRNKAASG LPVVHDIHNY FFNDHYEGED VISRLLGQEV DNQSLISCVH SSQKAAYWRR  600
NTIAGVSTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22213273464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460843
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071400.11e-157two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ91e-123ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2G9HNZ31e-150A0A2G9HNZ3_9LAMI; Two-component response regulator
STRINGMigut.G00111.1.p1e-140(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-115response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]