PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461252
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 295aa    MW: 31729.1 Da    PI: 6.7227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461252genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.4e-17110156455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  678461252 110 VHNLSEKRRRSRINEKLKALQTLIPNS-----NKTDKASMLDEAIEYLKQLQ 156
                6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.03E-19100160No hitNo description
SuperFamilySSF474592.88E-20103165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-19103165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.955106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-14110156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSDPYGNNES GDMSSFLQIL LQNSSPPPHN HDGNTASTSV FISGGIKAES SSSSINFSDP  60
TSFFTGDSER MNSVKYVLGS TAEGSDSFDV AAASNSAPPR SSKRTRAAEV HNLSEKRRRS  120
RINEKLKALQ TLIPNSNKTD KASMLDEAIE YLKQLQRQVQ MLTVRNGLSL HPGYSLSTLQ  180
SMVSSSSVPE LHEGSARLNA IGVPELQTRD HNVFMQNVPE TNVVSSSTMP SFTTSVANAT  240
SSVAIPQFGP PSQNHYGLLN HLSSPKDICR DDTVFRLQLD LSCSGNNTSP GVSSS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461252
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074391.29e-96transcription factor ALC-like
TrEMBLA0A2G9HK731e-110A0A2G9HK73_9LAMI; Uncharacterized protein
STRINGMigut.C00561.1.p8e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-35bHLH family protein