PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461547
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 207aa    MW: 22830.8 Da    PI: 6.9621
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461547genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151055148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ ++ E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
        678461547 10 RGNISEVEEDLIVRLHGLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
                     78999*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-22159IPR009057Homeodomain-like
SuperFamilySSF466893.59E-12460IPR009057Homeodomain-like
PROSITE profilePS5129423.262559IPR017930Myb domain
SMARTSM007174.9E-14957IPR001005SANT/Myb domain
PfamPF002491.4E-131055IPR001005SANT/Myb domain
CDDcd001678.56E-121455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MNYLRPGIKR GNISEVEEDL IVRLHGLLGN RWSLIAGRLP GRTDNEIKNY WNTHLLKKIN  60
TVRSPANAKD AAAVAPLPPP ENGKQTDSKK KQKKSKKKAE MIEATAEEEP PKIKVYAPKP  120
IRVTAKFFNP DDAYQSLGSR TSSSDCGGEA AAAVAAVESD PSFSWSPFLE ITDLPFYDGL  180
FDVLPGNYHP ESFPADVDLL DVFSHPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1326151110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461547
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.18e-51transcription repressor MYB5-like
TrEMBLA0A0E3JI122e-46A0A0E3JI12_9LAMI; MYB19 (Fragment)
STRINGXP_009607630.15e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-29myb domain protein 82