PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461711
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 613aa    MW: 68312.9 Da    PI: 6.4233
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461711genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-171111763198
                .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                + s++l+  d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++el+v+v++
  678461711 111 PPSQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGENGELRVGVRK 176
                34569************************************************..4499999***985 PP
2Auxin_resp110.31.9e-36202284183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+++F+v+Y+Pr+s+seF v+v+k+++a ++k+s+GmRfkm+fe+e+++err+sGt+vg+++  ++ Wp+S+WrsLk
   678461711 202 ASHALTTGTMFSVFYKPRTSRSEFLVSVNKYLEAQNHKLSAGMRFKMRFEGEEVPERRFSGTIVGIENDASSPWPDSEWRSLK 284
                 689******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.6E-696178IPR003340B3 DNA binding domain
SuperFamilySSF1019364.58E-2699205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-25106191IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-14111176No hitNo description
PfamPF023624.6E-15111175IPR003340B3 DNA binding domain
PROSITE profilePS5086310.8113178IPR003340B3 DNA binding domain
PfamPF065075.7E-34202284IPR010525Auxin response factor
PfamPF023091.6E-11479581IPR033389AUX/IAA domain
SuperFamilySSF542778.5E-12483567No hitNo description
PROSITE profilePS5174526.493488572IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MACRSANNFN GGPPTGPPND TLYRELWHAC AGPIVSVPCE GERVYYFPQG YMEQLEASTN  60
HGLEQQLPSF NLPSKILCKV MHVQLRAEPD TDEVYAQITL LPEPDDMTQQ PPSQELVASD  120
LHGNEWHFRH IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRGENGEL RVGVRKLMRQ  180
LNNVPSSVIS SHSMHLGVLA TASHALTTGT MFSVFYKPRT SRSEFLVSVN KYLEAQNHKL  240
SAGMRFKMRF EGEEVPERRF SGTIVGIEND ASSPWPDSEW RSLKVQWDEP SSIVRPDKIS  300
PWEAEPLVAS APPNSQTQQR AKRTRPAVLN SSTPELSSLG VRKLPSDTPA FTYHDPLRGR  360
ELYPSHKHGS GGRLSNMNYE SLLPASTSSI YQSARTEAAS QSLNPVSEKR QMTRCRLFGI  420
ELLDPPAADD AMLAASSGAV AENHCPPLCA ESEQQSEPSN HNPSNVSCDP EKSSLRSPHE  480
PSISRKNRSC TKVHMQGVAV GRAVDLTKFD CYEDLLKKLE DLFEIAGELT GTIKKWQVVY  540
TDDEDDMMMV GDDPWQEFCT MVRNKKIYIY TTEEAKMLSP RIKLPTGESK SAKLQSDAIA  600
GPEEQSSTIG TDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17153072355Auxin response factor 1
4ldw_A1e-17153072355Auxin response factor 1
4ldw_B1e-17153072355Auxin response factor 1
4ldx_A1e-17153072355Auxin response factor 1
4ldx_B1e-17153072355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461711
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367432e-36KX036743.1 Salvia miltiorrhiza auxin response factor ARF23 (ARF) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087626.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2G9HMH60.0A0A2G9HMH6_9LAMI; Auxin response factor
STRINGMigut.B00723.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]