PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461829
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 222aa    MW: 24659.4 Da    PI: 6.5299
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461829genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-1873122254
        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                g+ GVr +k +g+++AeIrd ++    + kr++lg+f taeeAa+a++a ++++e
  678461829  73 GFVGVRMRK-WGKYAAEIRDpFC----NgKRVWLGTFATAEEAAEAYVAKKREIE 122
                799****99.**********764....24**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.2E-1573143IPR001471AP2/ERF domain
PfamPF008471.8E-1073122IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1673121IPR016177DNA-binding domain
PROSITE profilePS5103216.46373131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-2074121IPR001471AP2/ERF domain
PRINTSPR003672.8E-87485IPR001471AP2/ERF domain
PRINTSPR003672.8E-897113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKDLNLGRAD ATKIRVSYSD PYATDTSSDE SDTPRSDLKR KVHEILLRRL PPKEGAVIGV  60
KFKRIRQSKE GRGFVGVRMR KWGKYAAEIR DPFCNGKRVW LGTFATAEEA AEAYVAKKRE  120
IEEKLRGIQR SSDGANEKSS YSVLKSESWE SHDSGEKEGS DNIDDCCGTN ESGESNNSGE  180
FGVLHGVRII DKNGFLVGDF SRLDDLSICA AAEYEASTRG HE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1370114246ATERF1
3gcc_A1e-1370114246ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461829
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50751534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-13ERF family protein