PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461862
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 242aa    MW: 27498.6 Da    PI: 6.6743
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461862genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3107.56.3e-34901951100
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k ltpsdv+k++rlv+pk++ae+h      g++ e++  l ++de g +W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++++ s+++l++
  678461862  90 FEKPLTPSDVGKLNRLVIPKQYAERHfpmncgGESCENGLLLNFMDEIGTTWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVTFSRHRASTGSLFI 189
                99*****************************988889999*************************************************9888******* PP

                EEE-SS CS
         B3  95 kvfrks 100
                +++r++
  678461862 190 GWRRRN 195
                ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-3984201IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-3185197IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-3089184No hitNo description
PfamPF023621.6E-3090195IPR003340B3 DNA binding domain
PROSITE profilePS5086314.86190195IPR003340B3 DNA binding domain
SMARTSM010193.1E-2890195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSVNHYYSEL PDAADGCWPN SLTESPPPNH DRRFLVPAGG IFCLQTTTPA PPPFAFNLNL  60
NNDEDEELDK NSNYDAAATE EWLRDREMLF EKPLTPSDVG KLNRLVIPKQ YAERHFPMNC  120
GGESCENGLL LNFMDEIGTT WRFRYSYWNS SQSYVLTKGW SRFVKEKRLD AGDVVTFSRH  180
RASTGSLFIG WRRRNQIAAA SGDGRGWNRE NSGQPKNPGP PTGYDEFLGG NKHKGLFIRT  240
ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-47831981117B3 domain-containing transcription factor NGA1
5os9_B1e-47831981117B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461862
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077827.16e-60B3 domain-containing protein At2g36080 isoform X1
RefseqXP_011077828.13e-60B3 domain-containing protein At5g06250 isoform X2
SwissprotQ9FNI32e-51Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A164WKJ89e-57A0A164WKJ8_DAUCS; Uncharacterized protein
TrEMBLS8CA513e-57S8CA51_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.J00664.1.p1e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-53B3 family protein