PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461921
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 196aa    MW: 23810.9 Da    PI: 5.7197
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461921genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.42.7e-112434286
   trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
               g++r+p+qCk+kw+nl +r+k  ++ e+++    ++++p++++l+
  678461921  2 GYNRNPEQCKCKWKNLVTRFKGSEAVEGDG---MRQQFPFYKELQ 43
               9***************************97...56679*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-8245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGYNRNPEQC KCKWKNLVTR FKGSEAVEGD GMRQQFPFYK ELQEIFGARM QRMLWMEAEA  60
GSASTPKKKP ELSDEEEGEN EESEGENGGQ RKKRRTQSRN AFSENPLIRG VKEIMEEFMK  120
QQMQMEMQWI REYEAREEER RGREMEWRRR MEDLERERVL MERSFKEEEE QRRVREEARA  180
EKRDALITAL LEKLRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461921
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095020.18e-69trihelix transcription factor GT-3b
RefseqXP_020553261.18e-69trihelix transcription factor GT-3b
SwissprotQ9SDW02e-36TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A2Z7B1Q63e-72A0A2Z7B1Q6_9LAMI; Trihelix transcription factor GT-3b
STRINGMigut.J00154.1.p6e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.16e-25Trihelix family protein