PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678462164
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 232aa    MW: 27549.1 Da    PI: 5.3299
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678462164genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.82.9e-1660113356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++ +eq++ Le+ Fe ++ +  e+++ LAk+ gL+erqV vWFqNrRa+++
  678462164  60 KKRRLRAEQVQFLEKSFEIENRLEPERKALLAKEAGLQERQVAVWFQNRRARYR 113
                5668999*********************************************99 PP
2HD-ZIP_I/II109.91.8e-3559149191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl +eqv++LE+sFe e++LeperK+ la+e glq rqvavWFqnrRAR++tk lEkdy aLk+++++lk++ ++L ke+ee+r+e+
    678462164  59 EKKRRLRAEQVQFLEKSFEIENRLEPERKALLAKEAGLQERQVAVWFQNRRARYRTKVLEKDYYALKARFQTLKADYDALVKENEEMRNEI 149
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1751115IPR009057Homeodomain-like
PROSITE profilePS5007117.02255115IPR001356Homeobox domain
SMARTSM003892.0E-1458119IPR001356Homeobox domain
PfamPF000461.2E-1360113IPR001356Homeobox domain
CDDcd000868.97E-1360115No hitNo description
Gene3DG3DSA:1.10.10.608.8E-1866113IPR009057Homeodomain-like
PRINTSPR000316.0E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000316.0E-595111IPR000047Helix-turn-helix motif
PfamPF021831.9E-12115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEGEEEQVHY TARKVSMKRE GIPFSPGHAD SLRFNLQGRS QAAQMEDDEQ ELLFPSHQEK  60
KRRLRAEQVQ FLEKSFEIEN RLEPERKALL AKEAGLQERQ VAVWFQNRRA RYRTKVLEKD  120
YYALKARFQT LKADYDALVK ENEEMRNEII LLSEKMNQKG EKLKQEESNE VKLLLEPLNG  180
DPLDFDLSQT LAQDEKNKST PKLEFEWDEY LQPNCCNLGF PVRNQGTWFW KY
Cis-element ? help Back to Top
SourceLink
PlantRegMap678462164
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071034.11e-52homeobox-leucine zipper protein HAT5-like
TrEMBLA0A4D8YIS32e-55A0A4D8YIS3_SALSN; Homeobox-leucine zipper protein
TrEMBLA0A4D9APJ02e-55A0A4D9APJ0_SALSN; Homeobox-leucine zipper protein
STRINGSolyc05g006980.2.13e-44(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-37homeobox 1