PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678463446
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 253aa    MW: 28636.1 Da    PI: 6.3681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678463446genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20104152355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  678463446 104 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 152
                8******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-33102162No hitNo description
SMARTSM003804.3E-37103166IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23103161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-32103161IPR001471AP2/ERF domain
PROSITE profilePS5103222.748103160IPR001471AP2/ERF domain
PfamPF008473.6E-14104152IPR001471AP2/ERF domain
PRINTSPR003676.4E-11104115IPR001471AP2/ERF domain
PRINTSPR003676.4E-11126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAAALGLYGS SGSSQGFYCD PFREELMQAL EPFMKNCAAS GPISSSPLEE TQVFSNPHSE  60
IYHETGYQFQ LQEQQLQMRY NQNLTCLAPK PAAMKATQKG VKLFRGVRQR HWGKWVAEIR  120
LPRNRTRLWL GTFDTAEEAA LAYDKAAYKL RGDFARLNFP HLKHHLSQSH PLSSSVDAKL  180
QAICESLAES EKHDTQNHHL IHETVKLEEP SSSSPSDEGS EVSFLDFSNC SSFEDLMMDK  240
CHSMEINWAY SQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21102160160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678463446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090520.12e-67ethylene-responsive transcription factor ERF060
SwissprotO656655e-60ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A4D9AKF51e-67A0A4D9AKF5_SALSN; EREBP-like factor
STRINGcassava4.1_010367m6e-63(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-38ERF family protein