PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678463573
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 300aa    MW: 32999.8 Da    PI: 9.9254
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678463573genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.8e-31226282358
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh
  678463573 226 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPVMLIVTYEGEHNH 282
                99************************988**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.1E-16176222IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-33212283IPR003657WRKY domain
PROSITE profilePS5081130.825219285IPR003657WRKY domain
SuperFamilySSF1182905.23E-27221283IPR003657WRKY domain
SMARTSM007742.3E-37224284IPR003657WRKY domain
PfamPF031068.0E-27226282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAVEFVSGYH LASKSEDAAA REAAAAGLHS VEKLIRLLSN SHPNFHEQTI DSGDYVAAAD  60
AAVNNLKKFI SLIDRGIRTG HARFRRRPVS NSSSSDILGL APGCKTEDEP VKTPKIYCPT  120
PIQRLPALPL PYQKFQIERK ESSTTINFAP PSAEVSMMSS GFQNTNLSRP PLSSFKRKCN  180
SMDDVSGKCT SGGASRCHCP KKRKSRMKRV IRVPAISMKM ADIPPDDYSW RKYGQKPIKG  240
SPHPRGYYKC SSVRGCPARK HVERALDDPV MLIVTYEGEH NHGLTLSKSE SPATVVLESC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21212284273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678463573
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5981394e-33FJ598139.1 Malus hupehensis WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074403.11e-129probable WRKY transcription factor 7
SwissprotQ9STX05e-84WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S4CEW41e-126A0A1S4CEW4_TOBAC; probable WRKY transcription factor 7
STRINGXP_009604893.11e-127(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-78WRKY DNA-binding protein 7