PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678463619
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 219aa    MW: 23850.4 Da    PI: 7.409
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678463619genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043126147223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                kC  Cgk F +   L  H+r+H
  678463619 126 KCYVCGKEFHSDKALFGHMRSH 147
                7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.346125152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-4126149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.66E-5126150No hitNo description
PfamPF139121.5E-6126148IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDSPNWESDE GSSAAHPNPR RKPEQEQGEK KDSLPRVSRG PPVPHSEPHG VGLPDESAFQ  60
WFRRLEPPPN PITGELDFLG TQGLVVTVQG GVHAVPMVGS PGEMTRKKMR HGQGSMKQPR  120
HGSGKKCYVC GKEFHSDKAL FGHMRSHPGR GWRGVYPPPS FQASQEFADL RDLQQAAIAA  180
VASPHEDTAT SSVRDRGQNA PEGRPGLPDL NHSPPSEDN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678463619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069476.12e-19uncharacterized protein LOC105155299
RefseqXP_011100162.12e-19uncharacterized protein LOC105178395
RefseqXP_011100164.12e-19uncharacterized protein LOC105178398
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9281713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.13e-12C2H2 family protein