PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678463650

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 198aa MW: 22885.5 Da PI: 10.4466

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678463650	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	78.4	1.3e-24	91	192	222	323
GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 +++ L+l++++ P+++++ + +n++ F++rf eal ys+lfd+++a++ re+e+r +E++l+++++ +++ ceg++r+e +t+++W+ ++ 678463650 91 RLQNAALRLIRKIDPDIFIFRVVNGTYNTPHFVARFREALFQYSSLFDMFDATMCREHENRLLLEAQLFRKKALSIIVCEGSQRVEHPKTYKQWQVGNRK 190 345699****************************************************************************************987766 PP GRAS 322 aG 323 aG 678463650 191 AG 192 66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.707	1	198	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-22	91	192	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAFNGLVSSV LYPHGLMDLG NFMSQGLISC NHDSDQLLGW LWPTLGTVRD SVFPLSTVQQ 60 NRNGKPLFYR LSESKISRLK RVNCSLNSLY RLQNAALRLI RKIDPDIFIF RVVNGTYNTP 120 HFVARFREAL FQYSSLFDMF DATMCREHEN RLLLEAQLFR KKALSIIVCE GSQRVEHPKT 180 YKQWQVGNRK AGNILGRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678463650

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089500.1	4e-39	scarecrow-like protein 30
Swissprot	O80933	8e-32	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1S4BI92	7e-36	A0A1S4BI92_TOBAC; scarecrow-like protein 14
STRING	GLYMA11G14670.1	3e-36	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	3e-34	GRAS family protein