PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678463726
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 244aa    MW: 27469 Da    PI: 8.5725
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678463726genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.6e-29103153151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                krienks r+vtfskRr g lKKA ELSvLCdaevaviifsstg+lyey+s
  678463726 103 KRIENKSAREVTFSKRRSGFLKKAGELSVLCDAEVAVIIFSSTGRLYEYCS 153
                79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-3895154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.13295155IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-2895157IPR002100Transcription factor, MADS-box
CDDcd002651.98E-3596154No hitNo description
PRINTSPR004046.9E-2797117IPR002100Transcription factor, MADS-box
PfamPF003191.0E-24104151IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-27117132IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-27132153IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTPATIFSFP PPADVDERRS TISNQIRVTL PPPFSLSPSA FCVVLLLYHG ASSTAPCLEV  60
ERSKKPTFLE IGKALTLLLY FFFGYDARDF ELGEMGKRKL EIKRIENKSA REVTFSKRRS  120
GFLKKAGELS VLCDAEVAVI IFSSTGRLYE YCSPNSGALR DSGFILFTIK CKRLAKARVC  180
FWELEEPFDA QRSVANLALL ENQLKTALME IEREKQNALA EEQSLPELDK VIIYLSQIIL  240
KRAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-1795155161MEF2C
5f28_B4e-1795155161MEF2C
5f28_C4e-1795155161MEF2C
5f28_D4e-1795155161MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678463726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837438.19e-29PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A109NSP52e-27A0A109NSP5_ERYGU; MADS affecting flowering 465 (Fragment)
TrEMBLA0A1S3X7P83e-27A0A1S3X7P8_TOBAC; agamous-like MADS-box protein AGL27 isoform X2
TrEMBLA0A1U7XVV43e-27A0A1U7XVV4_NICSY; agamous-like MADS-box protein AGL27 isoform X2
STRINGMigut.K00994.1.p3e-28(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.22e-25MIKC_MADS family protein