PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678463812
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 294aa    MW: 31913.1 Da    PI: 6.1609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678463812genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.1e-08209251754
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++ rrRR++i +++  L++l+P        K++ a++L +A +Y+k L
  678463812 209 AAARRRREKISEKMRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 251
                567*******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.74E-12193255No hitNo description
PROSITE profilePS5088815.237202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-13208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-14208261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-5210251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MADSEADFLM PQFQWEEEEA IFLGIDFCGE DALILDPMAA VLSEDMITCC SPASVENEGG  60
GATTVYSGDR DFMGDSVLGE GDAISSSSRR RKPNLYSVTS NAGDTTTHFD HPILTEKQRR  120
WKPNFQIPKA KKRATPAAAF SIYSQPSVSS SIISFQSGAS TPESDTEAFA CMKEMIYRAA  180
ALRPVGTGVE KPEKPKRKNV KLSEDPQTAA ARRRREKISE KMRVLQKLVP GGSKMDTASM  240
LDEAANYLKF LRSQVNLLQA LEGRGHGAGG ILPPVSSISF SMQPPPETVK SGHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195214KRKNVKLSEDPQTAAARRRR
2211216RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678463812
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010690114.18e-47(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-45bHLH family protein